Construct: ORF ccsbBroad304_14872

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004019.1_s304c1, BRDN0000402863
Derived from:
ccsbBroadEn_14872
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBB (7314)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14872
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7314 UBB ubiquitin B NM_001281716.1 98.6% 100% (many diffs)
2 human 7314 UBB ubiquitin B NM_001281717.1 98.6% 100% (many diffs)
3 human 7314 UBB ubiquitin B NM_001281718.1 98.6% 100% (many diffs)
4 human 7314 UBB ubiquitin B NM_001281719.1 98.6% 100% (many diffs)
5 human 7314 UBB ubiquitin B NM_001281720.1 98.6% 100% (many diffs)
6 human 7314 UBB ubiquitin B NM_018955.4 98.6% 100% (many diffs)
7 human 23666 UBBP4 ubiquitin B pseudogene 4 NR_144546.1 44.2% (many diffs)
8 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001033930.3 40.7% 27.1% (many diffs)
9 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001321018.2 40.7% 27.1% (many diffs)
10 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001321019.2 40.7% 27.1% (many diffs)
11 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001321020.2 40.7% 27.1% (many diffs)
12 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_003333.5 40.7% 27.1% (many diffs)
13 human 7316 UBC ubiquitin C NM_021009.7 29.1% 33.2% (many diffs)
14 mouse 22187 Ubb ubiquitin B NM_001313984.1 69% 74.7% (many diffs)
15 mouse 22187 Ubb ubiquitin B NM_011664.4 69% 74.7% (many diffs)
16 mouse 218963 Gm1821 predicted gene 1821; ubiqui... NR_002875.2 63.7% (many diffs)
17 mouse 22186 Uba52 ubiquitin A-52 residue ribo... NM_001348227.1 41.9% 27.1% (many diffs)
18 mouse 22186 Uba52 ubiquitin A-52 residue ribo... NM_001348228.1 41.9% 27.1% (many diffs)
19 mouse 22186 Uba52 ubiquitin A-52 residue ribo... NM_001348229.1 41.9% 27.1% (many diffs)
20 mouse 22186 Uba52 ubiquitin A-52 residue ribo... NM_019883.4 41.9% 27.1% (many diffs)
21 mouse 22190 Ubc ubiquitin C NM_019639.4 27.9% 31% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
753
ORF length:
687
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca gatcttcgtg aaaaccctta ccggcaagac catcaccctt gaggtggagc
121ccagtgacac catcgaaaat gtgaaggcca agatccagga taaggaaggc attccccccg
181accagcagag gctcatcttt gcaggcaagc agctggaaga cggccgtact ctttctgact
241acaacatcca gaaggagtcg accctgcacc tggtcctgcg cctgaggggt ggtatgcaga
301tcttcgtgaa gaccctgacc ggcaagacca tcaccctgga agtggagccc agtgacacca
361tcgaaaatgt gaaggccaag atccaggata aagaaggcat ccctcccgac cagcagaggc
421tcatctttgc aggcaagcag ctggaagatg gccgcactct ttctgactac aacatccaga
481aggagtcgac cctgcacctg gtcctgcgtc tgagaggtgg tatgcagatc ttcgtgaaga
541ccctgaccgg caagaccatc actctggagg tggagcccag tgacaccatc gaaaatgtga
601aggccaagat ccaggataag gaaggcattc cccccgacca gcagaggctc atctttgcag
661gcaagcagct ggaagacggc cgtactcttt ctgactacaa catccagaag gagtcgaccc
721tgcacctggt cctgcgcctg aggggtggct gttacccaac tttcttgtac aaagtggttg
781gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
841accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)