Transcript: Human NR_045044.2

Homo sapiens zinc finger C4H2-type containing (ZC4H2), transcript variant 5, non-coding RNA.

Source:
NCBI, updated 2019-07-16
Taxon:
Homo sapiens (human)
Gene:
ZC4H2 (55906)
Length:
2979
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_045044.2
NBCI Gene record:
ZC4H2 (55906)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_045044.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000128701 CCACGAAGTCTCCTATTTAAT pLKO.1 1097 3UTR 100% 15.000 21.000 N ZC4H2 n/a
2 TRCN0000274961 CCACGAAGTCTCCTATTTAAT pLKO_005 1097 3UTR 100% 15.000 21.000 N ZC4H2 n/a
3 TRCN0000285276 TTCACCGGAATGCACCTATAT pLKO_005 915 3UTR 100% 13.200 18.480 N ZC4H2 n/a
4 TRCN0000130921 CACCAGCAAATTCACCGGAAT pLKO.1 905 3UTR 100% 4.050 5.670 N ZC4H2 n/a
5 TRCN0000274959 GAGGCTGCATGATGAGTATAA pLKO_005 613 3UTR 100% 13.200 9.240 N ZC4H2 n/a
6 TRCN0000274960 ACAATCTGAGAATGACCTAAA pLKO_005 571 3UTR 100% 10.800 7.560 N ZC4H2 n/a
7 TRCN0000129354 CGAAACGGAAGCAGGATGAAT pLKO.1 981 3UTR 100% 5.625 3.938 N ZC4H2 n/a
8 TRCN0000130749 GCTGACATCAATGTGATGGAA pLKO.1 539 3UTR 100% 3.000 2.100 N ZC4H2 n/a
9 TRCN0000130928 CGCTGACATCAATGTGATGGA pLKO.1 538 3UTR 100% 2.640 1.848 N ZC4H2 n/a
10 TRCN0000129438 GCACCTGAAGGAATACAAGCA pLKO.1 457 3UTR 100% 2.640 1.848 N ZC4H2 n/a
11 TRCN0000128001 GCCCATATCTTGTTTCAGGTA pLKO.1 1365 3UTR 100% 2.640 1.848 N ZC4H2 n/a
12 TRCN0000275028 GCCCATATCTTGTTTCAGGTA pLKO_005 1365 3UTR 100% 2.640 1.848 N ZC4H2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_045044.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03680 pDONR223 100% 22.5% None 1_73del;124_378del;1001_2979del n/a
2 ccsbBroad304_03680 pLX_304 0% 22.5% V5 1_73del;124_378del;1001_2979del n/a
3 TRCN0000474495 CCAATCTAGTGATAACCTAGCATG pLX_317 56.9% 22.5% V5 1_73del;124_378del;1001_2979del n/a
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