Transcript: Human NR_137167.1

Homo sapiens double homeobox 4 (DUX4), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-08-21
Taxon:
Homo sapiens (human)
Gene:
DUX4 (100288687)
Length:
1670
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_137167.1
NBCI Gene record:
DUX4 (100288687)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_137167.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000243632 ACGGCGACGGAGACTCGTTTG pLKO_005 57 3UTR 100% 0.000 0.000 N DUX4L15 n/a
2 TRCN0000262857 TTTCAGAATGAGAGGTCACGC pLKO_005 199 3UTR 100% 2.160 1.512 N DUX4L7 n/a
3 TRCN0000263064 GAATGAGAGGTCACGCCAGCT pLKO_005 204 3UTR 100% 0.720 0.504 N DUX4L5 n/a
4 TRCN0000243631 CCGGGCATCGCCACCAGAGAA pLKO_005 130 3UTR 100% 0.000 0.000 N DUX4L15 n/a
5 TRCN0000243629 TGGCCCAGGCCATCGGCATTC pLKO_005 155 3UTR 100% 0.000 0.000 N DUX4L15 n/a
6 TRCN0000038947 TGGTTTCAGAATGAGAGGTCA pLKO.1 196 3UTR 100% 2.640 1.584 N DUX4L11 n/a
7 TRCN0000243625 GGTTTCAGAATGAGAGGTCAC pLKO_005 197 3UTR 100% 2.250 1.350 N DUX4L12 n/a
8 TRCN0000256539 GTTTCAGAATGAGAGGTCACG pLKO_005 198 3UTR 100% 2.160 1.296 N DUX4L6 n/a
9 TRCN0000243628 TGCTTTGAGCGGAACCCGTAC pLKO_005 109 3UTR 100% 0.750 0.450 N DUX4L12 n/a
10 TRCN0000257218 AGGCCCTGCGAGCCTGCTTTG pLKO_005 95 3UTR 100% 0.000 0.000 N DUX4L15 n/a
11 TRCN0000243637 GGGAGGAGCTGGCCAGAGAGA pLKO_005 371 3UTR 100% 0.000 0.000 N DUX4L4 n/a
12 TRCN0000263066 TCCAGATTTGGTTTCAGAATG pLKO_005 188 3UTR 100% 10.800 5.400 Y DUX4L5 n/a
13 TRCN0000256540 TTCAGATCTGGTTTCAGAATC pLKO_005 413 3UTR 100% 10.800 5.400 Y DUX4L6 n/a
14 TRCN0000243621 CCAGGATTCAGATCTGGTTTC pLKO_005 407 3UTR 100% 6.000 3.000 Y DUX4L10 n/a
15 TRCN0000257191 CCAGGGTCCAGATTTGGTTTC pLKO_005 182 3UTR 100% 6.000 3.000 Y DUX4L10 n/a
16 TRCN0000243622 CCTTTGAGAAGGATCGCTTTC pLKO_005 335 3UTR 100% 6.000 3.000 Y DUX4L10 n/a
17 TRCN0000262859 AGGATTCAGATCTGGTTTCAG pLKO_005 409 3UTR 100% 4.950 2.475 Y DUX4L7 n/a
18 TRCN0000256538 AGGGTCCAGATTTGGTTTCAG pLKO_005 184 3UTR 100% 4.950 2.475 Y DUX4L6 n/a
19 TRCN0000256536 CAGGATTCAGATCTGGTTTCA pLKO_005 408 3UTR 100% 4.950 2.475 Y DUX4L2 n/a
20 TRCN0000256537 CAGGGTCCAGATTTGGTTTCA pLKO_005 183 3UTR 100% 4.950 2.475 Y DUX4L2 n/a
21 TRCN0000015285 CCCAGGGTCCAGATTTGGTTT pLKO.1 181 3UTR 100% 4.950 2.475 Y LOC283039 n/a
22 TRCN0000256542 CGGAGTCCAGGATTCAGATCT pLKO_005 401 3UTR 100% 4.950 2.475 Y DUX4L6 n/a
23 TRCN0000015286 GATTCAGATCTGGTTTCAGAA pLKO.1 411 3UTR 100% 4.950 2.475 Y LOC283039 n/a
24 TRCN0000282446 GGTCCAGATTTGGTTTCAGAA pLKO_005 186 3UTR 100% 4.950 2.475 Y DUX4L7 n/a
25 TRCN0000015283 GTCCAGATTTGGTTTCAGAAT pLKO.1 187 3UTR 100% 4.950 2.475 Y LOC283039 n/a
26 TRCN0000038944 TCCAGGATTCAGATCTGGTTT pLKO.1 406 3UTR 100% 4.950 2.475 Y DUX4L11 n/a
27 TRCN0000256535 CTTTGAGAAGGATCGCTTTCC pLKO_005 336 3UTR 100% 4.050 2.025 Y DUX4L2 n/a
28 TRCN0000243623 GATCTGGTTTCAGAATCGAAG pLKO_005 417 3UTR 100% 4.050 2.025 Y DUX4L10 n/a
29 TRCN0000243620 GATTTGGTTTCAGAATGAGAG pLKO_005 192 3UTR 100% 4.050 2.025 Y DUX4L10 n/a
30 TRCN0000015199 GCCTTTGAGAAGGATCGCTTT pLKO.1 334 3UTR 100% 4.050 2.025 Y DUX1 n/a
31 TRCN0000263063 GGAGTCCAGGATTCAGATCTG pLKO_005 402 3UTR 100% 4.050 2.025 Y DUX4L5 n/a
32 TRCN0000038946 AGATCTGGTTTCAGAATCGAA pLKO.1 416 3UTR 100% 3.000 1.500 Y DUX4L11 n/a
33 TRCN0000421072 AGATTTGGTTTCAGAATGAGA pLKO_005 191 3UTR 100% 3.000 1.500 Y DUX4L1 n/a
34 TRCN0000017484 CTCCGAGCCTTTGAGAAGGAT pLKO.1 328 3UTR 100% 3.000 1.500 Y DUX3 n/a
35 TRCN0000256541 TTTGAGAAGGATCGCTTTCCA pLKO_005 337 3UTR 100% 3.000 1.500 Y DUX4L6 n/a
36 TRCN0000282448 AGCCTTTGAGAAGGATCGCTT pLKO_005 333 3UTR 100% 2.640 1.320 Y DUX4L7 n/a
37 TRCN0000017487 GAAGGATCGCTTTCCAGGCAT pLKO.1 342 3UTR 100% 2.640 1.320 Y DUX3 n/a
38 TRCN0000432095 GAGTCCAGGATTCAGATCTGG pLKO_005 403 3UTR 100% 2.640 1.320 Y DUX4L1 n/a
39 TRCN0000180718 GTCCAGGATTCAGATCTGGTT pLKO.1 405 3UTR 100% 2.640 1.320 Y DUX4L9 n/a
40 TRCN0000263062 TTGAGAAGGATCGCTTTCCAG pLKO_005 338 3UTR 100% 2.640 1.320 Y DUX4L5 n/a
41 TRCN0000256534 TTTGGTTTCAGAATGAGAGGT pLKO_005 194 3UTR 100% 2.640 1.320 Y DUX4L2 n/a
42 TRCN0000243627 ATCTGGTTTCAGAATCGAAGG pLKO_005 418 3UTR 100% 2.250 1.125 Y DUX4L12 n/a
43 TRCN0000265809 TCTGGTTTCAGAATCGAAGGG pLKO_005 419 3UTR 100% 2.160 1.080 Y DUX4L2 n/a
44 TRCN0000015284 CCCGGAGTCCAGGATTCAGAT pLKO.1 399 3UTR 100% 1.650 0.825 Y LOC283039 n/a
45 TRCN0000243626 GCTCCTCCGAGCCTTTGAGAA pLKO_005 324 3UTR 100% 1.650 0.825 Y DUX4L12 n/a
46 TRCN0000263065 TCCTCCGAGCCTTTGAGAAGG pLKO_005 326 3UTR 100% 1.350 0.675 Y DUX4L5 n/a
47 TRCN0000262858 TCCCGGAGTCCAGGATTCAGA pLKO_005 398 3UTR 100% 1.000 0.500 Y DUX4L7 n/a
48 TRCN0000243624 TTTCTGCAGCAGGCGCAACCT pLKO_005 1147 3UTR 100% 0.880 0.440 Y DUX4L12 n/a
49 TRCN0000017437 CGGAGCCCAGGGTCCAGATTT pLKO.1 176 3UTR 100% 0.000 0.000 Y DUX5 n/a
50 TRCN0000243641 CTCTCCCACCCTCAGGCTCCT pLKO_005 751 3UTR 100% 0.000 0.000 Y DUX4L4 n/a
51 TRCN0000015287 GCCCTGCTCCTCCGAGCCTTT pLKO.1 319 3UTR 100% 0.000 0.000 Y LOC283039 n/a
52 TRCN0000243639 GCCTCCCGGAGTCCAGGATTC pLKO_005 395 3UTR 100% 0.000 0.000 Y DUX4L4 n/a
53 TRCN0000243630 TCCTGGCGAGCCCGGAGTTTC pLKO_005 1130 3UTR 100% 0.000 0.000 Y DUX4L15 n/a
54 TRCN0000243640 TGCGGCCTGCTGCTGGATGAG pLKO_005 1108 3UTR 100% 0.000 0.000 Y DUX4L4 n/a
55 TRCN0000243638 TTTCGTGAGCCAGGCAGCGAG pLKO_005 618 3UTR 100% 0.000 0.000 Y DUX4L4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_137167.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.