Transcript: Human NR_146333.1

Homo sapiens ribosomal protein L5 (RPL5), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
RPL5 (6125)
Length:
1024
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_146333.1
NBCI Gene record:
RPL5 (6125)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_146333.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000074993 GATGATAGTTCGTGTGACAAA pLKO.1 279 3UTR 100% 4.950 6.930 N RPL5 n/a
2 TRCN0000291974 GATGATAGTTCGTGTGACAAA pLKO_005 279 3UTR 100% 4.950 6.930 N RPL5 n/a
3 TRCN0000074995 CGCTACTTAATGGAAGAAGAT pLKO.1 684 3UTR 100% 4.950 3.960 N RPL5 n/a
4 TRCN0000291975 CGCTACTTAATGGAAGAAGAT pLKO_005 684 3UTR 100% 4.950 3.960 N RPL5 n/a
5 TRCN0000074996 GCCTACTTTAAGAGATACCAA pLKO.1 160 3UTR 100% 3.000 2.400 N RPL5 n/a
6 TRCN0000292025 GCCTACTTTAAGAGATACCAA pLKO_005 160 3UTR 100% 3.000 2.400 N RPL5 n/a
7 TRCN0000074997 CCCTCACAGTACCAAACGATT pLKO.1 578 3UTR 100% 4.950 3.465 N RPL5 n/a
8 TRCN0000291973 CCCTCACAGTACCAAACGATT pLKO_005 578 3UTR 100% 4.950 3.465 N RPL5 n/a
9 TRCN0000074994 GTTCGTGTGACAAACAGAGAT pLKO.1 286 3UTR 100% 4.950 3.465 N RPL5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_146333.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11104 pDONR223 100% 29.5% None 1_129del;433_1024del n/a
2 ccsbBroad304_11104 pLX_304 0% 29.5% V5 1_129del;433_1024del n/a
3 TRCN0000473011 ATGTTATTTAATGTTTCATATAGG pLX_317 100% 29.5% V5 1_129del;433_1024del n/a
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