Transcript: Human NM_001369812.1

Homo sapiens zinc finger protein 114 (ZNF114), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-04-19
Taxon:
Homo sapiens (human)
Gene:
ZNF114 (163071)
Length:
2394
CDS:
411..1664

Additional Resources:

NCBI RefSeq record:
NM_001369812.1
NBCI Gene record:
ZNF114 (163071)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001369812.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000019905 GCATCATATACGTGATGAAAT pLKO.1 1031 CDS 100% 1.320 1.848 N ZNF114 n/a
2 TRCN0000425542 GAAATGAGGAACCACTCTAAA pLKO_005 789 CDS 100% 13.200 10.560 N ZNF114 n/a
3 TRCN0000426137 ATTCATCTTGAGTAGACATTT pLKO_005 1845 3UTR 100% 13.200 9.240 N ZNF114 n/a
4 TRCN0000019906 CAGCCGGATATTCTTCCTAAA pLKO.1 585 CDS 100% 10.800 7.560 N ZNF114 n/a
5 TRCN0000019907 CACCTCCAGAAATAACTCAAT pLKO.1 1175 CDS 100% 4.950 3.465 N ZNF114 n/a
6 TRCN0000019904 CCTGTCTTAAACGATAGTCAA pLKO.1 894 CDS 100% 4.950 3.465 N ZNF114 n/a
7 TRCN0000019908 AGAAAGATGAATCTCCTGTTA pLKO.1 751 CDS 100% 4.950 2.970 N ZNF114 n/a
8 TRCN0000218427 ACTGGAGAGAAACCCTATAAA pLKO_005 1557 CDS 100% 15.000 7.500 Y ZNF443 n/a
9 TRCN0000374174 ACTGGAGAGAAACCCTATAAA pLKO_005 1557 CDS 100% 15.000 7.500 Y Zfp97 n/a
10 TRCN0000155229 GATCAAGACCATCCTGGCTAA pLKO.1 2074 3UTR 100% 4.050 2.025 Y INTS7 n/a
11 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2020 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001369812.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05124 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05124 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000471546 CACCTAGCTTTGATTGTGAGCTAG pLX_317 41.9% 100% 100% V5 n/a
4 ccsbBroadEn_13331 pDONR223 100% 91.7% 91.8% None 1_102del;219A>G n/a
5 ccsbBroad304_13331 pLX_304 0% 91.7% 91.8% V5 1_102del;219A>G n/a
6 TRCN0000476951 ACCTTAGCTCGGTGGTCATGGAGC pLX_317 31.1% 91.7% 91.8% V5 1_102del;219A>G n/a
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