Transcript: Human NM_001367618.1

Homo sapiens double zinc ribbon and ankyrin repeat domains 1 (DZANK1), transcript variant 12, mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
DZANK1 (55184)
Length:
3554
CDS:
189..2522

Additional Resources:

NCBI RefSeq record:
NM_001367618.1
NBCI Gene record:
DZANK1 (55184)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001367618.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000141256 CCAGAGTACCTCAGATACTAT pLKO.1 1985 CDS 100% 5.625 7.875 N DZANK1 n/a
2 TRCN0000140966 CAGGTGTTATGCTCAGAACAA pLKO.1 1736 CDS 100% 4.950 6.930 N DZANK1 n/a
3 TRCN0000139001 CCAACCACACACTGTTCTGTA pLKO.1 3368 3UTR 100% 4.950 3.465 N DZANK1 n/a
4 TRCN0000139412 CCTCAGGTGTTATGCTCAGAA pLKO.1 1733 CDS 100% 4.950 3.465 N DZANK1 n/a
5 TRCN0000143719 GCAGAGTTAGATATGCACATA pLKO.1 3246 3UTR 100% 4.950 3.465 N DZANK1 n/a
6 TRCN0000121423 GCCACTTTACTGGGATGCAAT pLKO.1 2343 CDS 100% 4.950 3.465 N Dzank1 n/a
7 TRCN0000140527 GTGTTTGACAAGCACGGAGAT pLKO.1 821 CDS 100% 4.050 2.835 N DZANK1 n/a
8 TRCN0000140722 GCCTTCATCACAAGAGTCGAT pLKO.1 1184 CDS 100% 2.640 1.848 N DZANK1 n/a
9 TRCN0000143194 GCTGTTATGAATAAGCACCAT pLKO.1 2205 CDS 100% 2.640 1.848 N DZANK1 n/a
10 TRCN0000139981 GCTTCTGTCAAGAATGTGGCT pLKO.1 919 CDS 100% 0.660 0.462 N DZANK1 n/a
11 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 2582 3UTR 100% 4.950 2.475 Y ERAP2 n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2583 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001367618.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12179 pDONR223 100% 31.6% 23.2% None (many diffs) n/a
2 ccsbBroad304_12179 pLX_304 0% 31.6% 23.2% V5 (many diffs) n/a
3 TRCN0000474121 GAACTTTATTTTACAAACTGTAGT pLX_317 69.2% 31.6% 23.2% V5 (many diffs) n/a
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