Transcript: Human XM_005245305.5

PREDICTED: Homo sapiens kirre like nephrin family adhesion molecule 1 (KIRREL1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KIRREL1 (55243)
Length:
7528
CDS:
65..2386

Additional Resources:

NCBI RefSeq record:
XM_005245305.5
NBCI Gene record:
KIRREL1 (55243)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005245305.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000147545 GCTATGAGACAAATGTGGATT pLKO.1 876 CDS 100% 4.950 6.930 N KIRREL1 n/a
2 TRCN0000426204 AGGGTGAGCGTGTTGTCTTTA pLKO_005 771 CDS 100% 13.200 9.240 N KIRREL1 n/a
3 TRCN0000425375 GGCCATCTACTCGTCGTTTAA pLKO_005 1819 CDS 100% 13.200 9.240 N KIRREL1 n/a
4 TRCN0000443630 AGTGAACCGAGAGCCACTTAC pLKO_005 1738 CDS 100% 10.800 7.560 N KIRREL1 n/a
5 TRCN0000442916 CCACGCTCACCATCAACAATG pLKO_005 1473 CDS 100% 10.800 7.560 N KIRREL1 n/a
6 TRCN0000148747 CTTCTTCATCGCCTTGGTATT pLKO.1 1645 CDS 100% 10.800 7.560 N KIRREL1 n/a
7 TRCN0000148315 CGACTTTCAGACTCACTACAA pLKO.1 1504 CDS 100% 4.950 3.465 N KIRREL1 n/a
8 TRCN0000146273 CGAGAACTATGAGAAGTTCAA pLKO.1 2164 CDS 100% 0.495 0.347 N KIRREL1 n/a
9 TRCN0000148726 CATCTTCTTCTTCATCGCCTT pLKO.1 1639 CDS 100% 2.160 1.296 N KIRREL1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005245305.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03559 pDONR223 100% 97.9% 97.9% None 1044_1091del n/a
2 ccsbBroad304_03559 pLX_304 0% 97.9% 97.9% V5 1044_1091del n/a
3 TRCN0000478921 TACTTAACGGTGTTCCCTGAATTG pLX_317 15.5% 97.9% 97.9% V5 1044_1091del n/a
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