Transcript: Human XM_005273065.3

PREDICTED: Homo sapiens BRO1 domain and CAAX motif containing (BROX), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BROX (148362)
Length:
3760
CDS:
43..1278

Additional Resources:

NCBI RefSeq record:
XM_005273065.3
NBCI Gene record:
BROX (148362)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005273065.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000265625 ATTTAGAGTCACGACTCATAG pLKO_005 563 CDS 100% 10.800 15.120 N BROX n/a
2 TRCN0000265630 GACCTGGACCAACAGTCAAAC pLKO_005 929 CDS 100% 10.800 15.120 N BROX n/a
3 TRCN0000265642 GAATGCAGCAGATTCATATTT pLKO_005 216 CDS 100% 15.000 10.500 N BROX n/a
4 TRCN0000265634 AGCCTATACCTTTCGAATTTC pLKO_005 1097 CDS 100% 13.200 9.240 N BROX n/a
5 TRCN0000134917 CCTTGAACTGTTCACTGATTT pLKO.1 171 CDS 100% 13.200 9.240 N BROX n/a
6 TRCN0000265647 AGAAGTTCATCGAAGCCTAAA pLKO_005 465 CDS 100% 10.800 7.560 N BROX n/a
7 TRCN0000265629 CTTCACTTGAAGATGTGTTTC pLKO_005 766 CDS 100% 10.800 7.560 N BROX n/a
8 TRCN0000265635 TAATGTAGCTTTATGGTATAC pLKO_005 390 CDS 100% 10.800 7.560 N BROX n/a
9 TRCN0000265628 TTCAAGTGGACTGATACATTG pLKO_005 310 CDS 100% 10.800 7.560 N BROX n/a
10 TRCN0000133775 CCAAGAAAGCAAGTTACGATA pLKO.1 279 CDS 100% 4.950 3.465 N BROX n/a
11 TRCN0000134743 GAGACTTTATTGGCTAGTGAT pLKO.1 817 CDS 100% 4.950 3.465 N BROX n/a
12 TRCN0000134683 GTTATTCAATGTCAGGCTGAA pLKO.1 592 CDS 100% 4.050 2.835 N BROX n/a
13 TRCN0000134719 GCACTGTGTAAAGAATATGGA pLKO.1 898 CDS 100% 3.000 2.100 N BROX n/a
14 TRCN0000135942 GTGATAAATGCGGTGAAGCAA pLKO.1 833 CDS 100% 3.000 2.100 N BROX n/a
15 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1902 3UTR 100% 5.625 2.813 Y KLHL30 n/a
16 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1902 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005273065.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05013 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05013 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000470606 TCCAAAATTTCTCGGTGCAACGGC pLX_317 31.3% 100% 100% V5 n/a
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