Construct: ORF TRCN0000478485

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005203.1_s317c1
Derived from:
ccsbBroadEn_13437
DNA Barcode:
GACCTCCTCGGGGGACTGGACCCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BEND7 (222389)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478485
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 222389 BEND7 BEN domain containing 7 NM_001100912.1 97.5% 97.5% 1_27del;1011A>G
2 human 222389 BEND7 BEN domain containing 7 XM_011519411.2 97.5% 97.5% 1_27del;1011A>G
3 human 222389 BEND7 BEN domain containing 7 XM_011519408.2 97.2% 97.3% 1_27del;1011A>G;1064_1066delCAG
4 human 222389 BEND7 BEN domain containing 7 XM_011519410.3 96.9% 96.8% (many diffs)
5 human 222389 BEND7 BEN domain containing 7 XM_024447885.1 96.9% 96.8% (many diffs)
6 human 222389 BEND7 BEN domain containing 7 XM_011519407.1 96.7% 96.5% (many diffs)
7 human 222389 BEND7 BEN domain containing 7 XM_011519405.2 96.7% 96.5% (many diffs)
8 human 222389 BEND7 BEN domain containing 7 XM_011519406.2 96.7% 96.5% (many diffs)
9 human 222389 BEND7 BEN domain containing 7 XM_011519404.3 96.4% 96.2% (many diffs)
10 human 222389 BEND7 BEN domain containing 7 NM_001370075.1 93.5% 93.3% (many diffs)
11 human 222389 BEND7 BEN domain containing 7 XM_011519403.2 93% 93% (many diffs)
12 human 222389 BEND7 BEN domain containing 7 XM_011519402.2 92.8% 92.8% (many diffs)
13 human 222389 BEND7 BEN domain containing 7 XM_011519401.2 92.6% 92.6% (many diffs)
14 human 222389 BEND7 BEN domain containing 7 XM_011519400.2 92.3% 92.3% (many diffs)
15 human 222389 BEND7 BEN domain containing 7 XM_011519399.2 92.1% 91.8% (many diffs)
16 human 222389 BEND7 BEN domain containing 7 XM_011519398.2 91.9% 91.6% (many diffs)
17 human 222389 BEND7 BEN domain containing 7 NM_001369863.1 82.5% 82.6% 1_183del;447_448ins39;1128A>G
18 human 222389 BEND7 BEN domain containing 7 XM_017015918.1 82.3% 82.4% (many diffs)
19 human 222389 BEND7 BEN domain containing 7 XM_017015919.2 82.1% 81.9% (many diffs)
20 human 222389 BEND7 BEN domain containing 7 XM_011519412.1 78.8% 65.7% 1_27del;720_721insCCAG;912_913ins206
21 human 222389 BEND7 BEN domain containing 7 XM_011519391.2 75.9% 75.6% (many diffs)
22 human 222389 BEND7 BEN domain containing 7 XM_011519390.2 75.7% 75.4% (many diffs)
23 human 222389 BEND7 BEN domain containing 7 XM_011519394.2 75.7% 75.4% (many diffs)
24 human 222389 BEND7 BEN domain containing 7 XM_011519395.2 75.7% 75.4% (many diffs)
25 human 222389 BEND7 BEN domain containing 7 XM_011519396.2 75.7% 75.4% (many diffs)
26 human 222389 BEND7 BEN domain containing 7 XM_011519397.2 75.7% 75.4% (many diffs)
27 human 222389 BEND7 BEN domain containing 7 XM_017015915.1 75.7% 75.4% (many diffs)
28 human 222389 BEND7 BEN domain containing 7 XR_930481.1 73% (many diffs)
29 human 222389 BEND7 BEN domain containing 7 NM_152751.2 73% 72.7% (many diffs)
30 human 222389 BEND7 BEN domain containing 7 XM_011519393.3 72.1% 71.8% (many diffs)
31 human 222389 BEND7 BEN domain containing 7 XR_930480.2 71.7% (many diffs)
32 human 222389 BEND7 BEN domain containing 7 XM_011519392.2 66% 65.7% (many diffs)
33 human 222389 BEND7 BEN domain containing 7 XM_005252402.5 65.9% 65.6% (many diffs)
34 human 222389 BEND7 BEN domain containing 7 XR_930474.3 60.9% (many diffs)
35 human 222389 BEND7 BEN domain containing 7 XR_930479.1 60.3% (many diffs)
36 human 222389 BEND7 BEN domain containing 7 XR_930476.2 47.4% (many diffs)
37 human 222389 BEND7 BEN domain containing 7 XR_930475.2 47.3% (many diffs)
38 human 222389 BEND7 BEN domain containing 7 XR_002956970.1 45.8% (many diffs)
39 human 222389 BEND7 BEN domain containing 7 XR_930482.2 39.7% (many diffs)
40 human 222389 BEND7 BEN domain containing 7 XR_002956969.1 33.1% (many diffs)
41 human 222389 BEND7 BEN domain containing 7 XR_002956968.1 33% (many diffs)
42 human 222389 BEND7 BEN domain containing 7 XR_930478.2 24.8% (many diffs)
43 human 222389 BEND7 BEN domain containing 7 XR_001747061.1 24.8% (many diffs)
44 human 222389 BEND7 BEN domain containing 7 XR_930472.1 17.5% (many diffs)
45 human 222389 BEND7 BEN domain containing 7 XR_930473.1 14.7% (many diffs)
46 mouse 209645 Bend7 BEN domain containing 7 XM_006497445.3 76.3% 76.4% (many diffs)
47 mouse 209645 Bend7 BEN domain containing 7 XM_011238968.2 76.3% 76.4% (many diffs)
48 mouse 209645 Bend7 BEN domain containing 7 NM_001190400.1 67.6% 67.7% (many diffs)
49 mouse 209645 Bend7 BEN domain containing 7 NM_178663.4 67.4% 67.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1161
ORF length:
1095
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag aagattgctg aacgacagca ctgggcggat ctatcagcga gttggcaaag
121aaggagagaa actaaaagaa gagccccagg acctggattt agtctggcct ccacgtttga
181actcctctgc tgaggccccg caaagcctcc acccgtcttc acgtggtgtg tggaatgagc
241taccgcccca gagtggacag ttctcagggc agtatggcac ccgttctaga accttccaaa
301gccagcccca ccctaccacg agctccaatg gtatggttgt caacaaacat tcagaaggct
361ctcatggggg agaacttcca gtggtgaatt catcagctgg atcaaactgc tgtacttgta
421actgccagtc aacgttgcag gccattctac aagaactcaa gaccatgagg aaattaatgc
481aaattcaagc agttggaact caaaacagac aacaacctcc aatttccctt atatgctccc
541agcgaactgc tgtctcacga aagagaaata aaaagaaaaa agtgccccca aagactgtgg
601aacctcttac tgtgaaacag aagcccagtg ggtcagagat ggagaaaaag tcggtggtgg
661cctctgagct atctgctctc caggcagccg agcacacctc cccggaggag agccgcgttc
721taggattcgg cattgttctg gaatcacctt cctcagatcc agaagtacaa cttgctgaag
781gctttgacgt gtttatgcct aaatctcagc tggactctat attgtcaaac tacactcgct
841caggaagcct tctgtttaga aaactggtgt gtgcgttttt tgatgacaag actttggcta
901actccTTACC CAATGGGAAG AGGAAAAGAG GACTCAATGA CAACCGGAAA GGACTAGACC
961AAAATATTGT GGGTGCAATA AAAGTCTTCA CAGAAAAGTA CTGTACAGCT AACCATGTGG
1021ATAAGCTTCC TGGCCCAAGA GATTGGGTGC AGATTCTACA GGATCAAATT AAACTGGCCA
1081GAAGAAGGTT AAAAAGAGGC TCAGAGATCG CGGACAGTGA TGAAAGACTG GACGGCATTG
1141CTCTACCACC AACAGTGGTC TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1201CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1261AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAGACC TCCTCGGGGG
1321ACTGGACCCA ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)