Transcript: Mouse XM_006507766.3

PREDICTED: Mus musculus G protein-coupled receptor 26 (Gpr26), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gpr26 (233919)
Length:
2393
CDS:
791..1582

Additional Resources:

NCBI RefSeq record:
XM_006507766.3
NBCI Gene record:
Gpr26 (233919)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006507766.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000027418 CGCCAACTCCATGCTCAGCAT pLKO.1 1060 CDS 100% 0.880 0.704 N Gpr26 n/a
2 TRCN0000357151 AGAAGATCAGCACCTTCATAG pLKO_005 1512 CDS 100% 10.800 7.560 N GPR26 n/a
3 TRCN0000027479 CTTGTGTGCTTTGCACCCTAT pLKO.1 1541 CDS 100% 4.050 2.835 N Gpr26 n/a
4 TRCN0000027441 GCTCTGCTTCACGTACCTCAA pLKO.1 1351 CDS 100% 4.050 2.835 N Gpr26 n/a
5 TRCN0000027421 CCTGCTGTGTACCGTGGTCAA pLKO.1 946 CDS 100% 1.350 0.945 N Gpr26 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006507766.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06317 pDONR223 100% 71.9% 75% None (many diffs) n/a
2 ccsbBroad304_06317 pLX_304 0% 71.9% 75% V5 (many diffs) n/a
3 TRCN0000481581 CTTCCTAATCAATGCGATTCTGCA pLX_317 44.4% 71.9% 75% V5 (many diffs) n/a
4 TRCN0000489387 ACTCAATCACTTTAGCCTGAGGAA pLX_317 35.2% 71.9% 75% V5 (not translated due to prior stop codon) (many diffs) n/a
5 TRCN0000489409 ATGGTCTATATCTTACATACTTGC pLX_317 34.5% 71.9% 74.8% V5 (many diffs) n/a
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