Transcript: Mouse XM_006514793.1

PREDICTED: Mus musculus cytoplasmic polyadenylation element binding protein 4 (Cpeb4), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cpeb4 (67579)
Length:
7646
CDS:
1405..3543

Additional Resources:

NCBI RefSeq record:
XM_006514793.1
NBCI Gene record:
Cpeb4 (67579)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006514793.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000197762 GCTACTCATAACATTCAGGAT pLKO.1 1600 CDS 100% 2.640 3.696 N Cpeb4 n/a
2 TRCN0000198287 GTCCCTTACTGGTTTCAGTAA pLKO.1 1893 CDS 100% 0.495 0.693 N Cpeb4 n/a
3 TRCN0000435567 CCCTGGCGCTTCAGCTAATAA pLKO_005 1989 CDS 100% 15.000 12.000 N Cpeb4 n/a
4 TRCN0000177316 GCAAAGCAATACTGGGAATAA pLKO.1 1434 CDS 100% 13.200 10.560 N Cpeb4 n/a
5 TRCN0000152631 GCATATTTCATTCCGCTGGAA pLKO.1 3519 CDS 100% 2.640 2.112 N CPEB4 n/a
6 TRCN0000150825 GCTGTTGGAAAGACTTGATAA pLKO.1 6753 3UTR 100% 13.200 9.240 N CPEB4 n/a
7 TRCN0000158083 CCAGTGTTGACAGGGTTTGAT pLKO.1 1816 CDS 100% 5.625 3.938 N CPEB4 n/a
8 TRCN0000198916 GAAGCTGGAATACTGCCTGAA pLKO.1 1711 CDS 100% 4.050 2.835 N Cpeb4 n/a
9 TRCN0000156565 GCTGCCTCATTTGGCGAATAA pLKO.1 2214 CDS 100% 13.200 7.920 N CPEB4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006514793.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12692 pDONR223 100% 42.5% 44.9% None (many diffs) n/a
2 ccsbBroad304_12692 pLX_304 0% 42.5% 44.9% V5 (many diffs) n/a
3 TRCN0000491501 CTTGCGGGTGCGAGCAGGAATTAG pLX_317 35.5% 42.5% 44.9% V5 (many diffs) n/a
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