Transcript: Mouse XM_006532197.3

PREDICTED: Mus musculus gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6 (Gabra6), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gabra6 (14399)
Length:
2207
CDS:
254..1612

Additional Resources:

NCBI RefSeq record:
XM_006532197.3
NBCI Gene record:
Gabra6 (14399)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006532197.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000089410 CCTTGTGTACTGGATAGTTTA pLKO.1 1549 CDS 100% 13.200 18.480 N Gabra6 n/a
2 TRCN0000089411 CCAGATATACACTCCGTGCAT pLKO.1 985 CDS 100% 2.640 3.696 N Gabra6 n/a
3 TRCN0000089409 CCCAACAAGCTCTTCCGATTA pLKO.1 644 CDS 100% 10.800 7.560 N Gabra6 n/a
4 TRCN0000089412 ACAGTCTATTTCCACTTACAA pLKO.1 941 CDS 100% 5.625 3.938 N Gabra6 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006532197.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06242 pDONR223 100% 84.1% 89.6% None (many diffs) n/a
2 ccsbBroad304_06242 pLX_304 0% 84.1% 89.6% V5 (many diffs) n/a
3 TRCN0000491845 TAGATACCCGGTCTCTAGAACCTC pLX_317 9.9% 84.1% 89.6% V5 (many diffs) n/a
Download CSV