Transcript: Mouse XM_011251338.1

PREDICTED: Mus musculus spermiogenesis specific transcript on the Y 2 (Ssty2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ssty2 (70009)
Length:
684
CDS:
1..684

Additional Resources:

NCBI RefSeq record:
XM_011251338.1
NBCI Gene record:
Ssty2 (70009)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011251338.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000347896 CAACAAACCCTTCTCTTTATT pLKO_005 143 CDS 100% 15.000 7.500 Y Gm21394 n/a
2 TRCN0000248125 CTATACTCTGGTGTCAAATAT pLKO_005 657 CDS 100% 15.000 7.500 Y Ssty2 n/a
3 TRCN0000347889 ACAAACCCTTCTCTTTATTTG pLKO_005 145 CDS 100% 13.200 6.600 Y Gm20917 n/a
4 TRCN0000347825 ACCTCCATATCTATGTCTATA pLKO_005 641 CDS 100% 13.200 6.600 Y Gm21394 n/a
5 TRCN0000216267 CAATCCTACTGTGTACTTTAT pLKO.1 606 CDS 100% 13.200 6.600 Y Ssty2 n/a
6 TRCN0000178927 CAGAGAGGTACAACACAAATT pLKO.1 303 CDS 100% 13.200 6.600 Y Ssty2 n/a
7 TRCN0000347820 CCAACAAACCCTTCTCTTTAT pLKO_005 142 CDS 100% 13.200 6.600 Y Gm20823 n/a
8 TRCN0000347826 CCAATCCTACTGTGTACTTTA pLKO_005 605 CDS 100% 13.200 6.600 Y Gm21394 n/a
9 TRCN0000255945 CTACTGTGTACTTTATCAAAT pLKO_005 611 CDS 100% 13.200 6.600 Y Gm21943 n/a
10 TRCN0000262125 CTGGTGTCAAATATCACTTAA pLKO_005 664 CDS 100% 13.200 6.600 Y Gm20815 n/a
11 TRCN0000347817 CTGTGTACTTTATCAAATTTC pLKO_005 614 CDS 100% 13.200 6.600 Y Gm20917 n/a
12 TRCN0000178413 GCAGAGAGGTACAACACAAAT pLKO.1 302 CDS 100% 13.200 6.600 Y Gm20815 n/a
13 TRCN0000179795 GCCAACAAACCCTTCTCTTTA pLKO.1 141 CDS 100% 13.200 6.600 Y Gm20738 n/a
14 TRCN0000255944 GCCATTCTTACAGGACTATTT pLKO_005 378 CDS 100% 13.200 6.600 Y Gm21943 n/a
15 TRCN0000183358 GTCTATACTCTGGTGTCAAAT pLKO.1 655 CDS 100% 13.200 6.600 Y Gm21943 n/a
16 TRCN0000347807 GTGATGACAATGACTTCTTAA pLKO_005 512 CDS 100% 13.200 6.600 Y Gm20867 n/a
17 TRCN0000347881 TCTATACTCTGGTGTCAAATA pLKO_005 656 CDS 100% 13.200 6.600 Y Gm20867 n/a
18 TRCN0000255941 TGATGACAATGACTTCTTAAT pLKO_005 513 CDS 100% 13.200 6.600 Y Gm21943 n/a
19 TRCN0000262124 TGCCATTCTTACAGGACTATT pLKO_005 377 CDS 100% 13.200 6.600 Y Gm20815 n/a
20 TRCN0000255942 ACGGGTGGAAGGAAGGTAATG pLKO_005 80 CDS 100% 10.800 5.400 Y Gm21943 n/a
21 TRCN0000248126 ATCCGGTCCTCTACGTCTATC pLKO_005 419 CDS 100% 10.800 5.400 Y Ssty2 n/a
22 TRCN0000347835 ATTTCTCGGTGACCTCCATAT pLKO_005 630 CDS 100% 10.800 5.400 Y Gm20852 n/a
23 TRCN0000248128 CCCATTGGAAGGCCATCATTC pLKO_005 110 CDS 100% 10.800 5.400 Y Ssty2 n/a
24 TRCN0000347891 CGAGATCAGGTGATGACAATG pLKO_005 503 CDS 100% 10.800 5.400 Y Gm20917 n/a
25 TRCN0000347809 CTAGGTCAACTGCCAACAAAC pLKO_005 130 CDS 100% 10.800 5.400 Y Gm20867 n/a
26 TRCN0000347836 CTCTTTATTTGGTGAAGTATG pLKO_005 155 CDS 100% 10.800 5.400 Y Gm20852 n/a
27 TRCN0000347821 TAGCCCAGGTGCCATTCTTAC pLKO_005 368 CDS 100% 10.800 5.400 Y Gm20823 n/a
28 TRCN0000347912 TCCACAGCGATGAGAGGATTT pLKO_005 206 CDS 100% 10.800 5.400 Y Gm20854 n/a
29 TRCN0000248127 TCGGTGACCTCCATATCTATG pLKO_005 635 CDS 100% 10.800 5.400 Y Ssty2 n/a
30 TRCN0000257668 TGGTGAAGTATGACGGAATTG pLKO_005 164 CDS 100% 10.800 5.400 Y Ssty2 n/a
31 TRCN0000347888 TTAAGGTCTTGCCTCACAAAG pLKO_005 233 CDS 100% 10.800 5.400 Y Gm20917 n/a
32 TRCN0000347844 TTTCTCGGTGACCTCCATATC pLKO_005 631 CDS 100% 10.800 5.400 Y Gm20854 n/a
33 TRCN0000347936 TAATGAGCCTGTCACCCATTG pLKO_005 96 CDS 100% 6.000 3.000 Y Gm20816 n/a
34 TRCN0000347837 ACCCATTGGAAGGCCATCATT pLKO_005 109 CDS 100% 5.625 2.813 Y Gm20852 n/a
35 TRCN0000347939 CATTGGAAGGCCATCATTCTA pLKO_005 112 CDS 100% 5.625 2.813 Y Gm20809 n/a
36 TRCN0000197545 CCTACTGTGTACTTTATCAAA pLKO.1 610 CDS 100% 5.625 2.813 Y Gm20815 n/a
37 TRCN0000348021 CGGGTGGAAGGAAGGTAATGA pLKO_005 81 CDS 100% 5.625 2.813 Y Gm20809 n/a
38 TRCN0000348012 CTAGCCCAGGTGCCATTCTTA pLKO_005 367 CDS 100% 5.625 2.813 Y Gm20865 n/a
39 TRCN0000347846 GGTGAAGTATGACGGAATTGA pLKO_005 165 CDS 100% 5.625 2.813 Y Gm20854 n/a
40 TRCN0000179232 GTTCGGAAAGGTTGTTTACAA pLKO.1 576 CDS 100% 5.625 2.813 Y Ssty2 n/a
41 TRCN0000347910 TCTAGGTCAACTGCCAACAAA pLKO_005 129 CDS 100% 5.625 2.813 Y Gm20854 n/a
42 TRCN0000347935 ACCAGAGATGATGGATCCAAA pLKO_005 553 CDS 100% 4.950 2.475 Y Gm20816 n/a
43 TRCN0000347929 CAGCTCCTGGATGACTACAAG pLKO_005 439 CDS 100% 4.950 2.475 Y Gm20865 n/a
44 TRCN0000347834 GATCCGGTCCTCTACGTCTAT pLKO_005 418 CDS 100% 4.950 2.475 Y Gm20852 n/a
45 TRCN0000184520 GCGAGATCAGGTGATGACAAT pLKO.1 502 CDS 100% 4.950 2.475 Y Gm21943 n/a
46 TRCN0000196103 GTGCAGTACACCAGAGATGAT pLKO.1 544 CDS 100% 4.950 2.475 Y Gm20738 n/a
47 TRCN0000347847 TCCGGTCCTCTACGTCTATCA pLKO_005 420 CDS 100% 4.950 2.475 Y Gm20854 n/a
48 TRCN0000197481 CCCTTCTCTTTATTTGGTGAA pLKO.1 150 CDS 100% 4.050 2.025 Y Gm20815 n/a
49 TRCN0000189709 GAAAGATGGCTCTGAGGACAA pLKO.1 330 CDS 100% 4.050 2.025 Y Gm20747 n/a
50 TRCN0000202389 GTAATGAGCCTGTCACCCATT pLKO.1 95 CDS 100% 4.050 2.025 Y Gm20747 n/a
51 TRCN0000183216 GTTTACAAAGTTCTAGCCAAT pLKO.1 589 CDS 100% 4.050 2.025 Y Gm20738 n/a
52 TRCN0000348019 TTTGGTGAAGTATGACGGAAT pLKO_005 162 CDS 100% 4.050 2.025 Y Gm20809 n/a
53 TRCN0000202239 GAAGGAAGGTAATGAGCCTGT pLKO.1 87 CDS 100% 2.160 1.080 Y Gm20747 n/a
54 TRCN0000192244 CTTCTTAATAGGTTCCTGGGT pLKO.1 525 CDS 100% 0.660 0.330 Y Gm20747 n/a
55 TRCN0000347897 CCATTCTTACAGGACTATTTG pLKO_005 379 CDS 100% 13.200 6.600 Y Gm21394 n/a
56 TRCN0000347819 TGGTGTCAAATATCACTTAAA pLKO_005 665 CDS 100% 13.200 6.600 Y Gm20823 n/a
57 TRCN0000347932 CTTGCCTCACAAAGTAGTTTC pLKO_005 240 CDS 100% 10.800 5.400 Y Gm20865 n/a
58 TRCN0000347938 TTACAAAGTTCTAGCCAATTC pLKO_005 591 CDS 100% 10.800 5.400 Y Gm20809 n/a
59 TRCN0000347937 TTTACAAAGTTCTAGCCAATT pLKO_005 590 CDS 100% 10.800 5.400 Y Gm20816 n/a
60 TRCN0000180847 GTCTTGCCTCACAAAGTAGAT pLKO.1 238 CDS 100% 4.950 2.475 Y Ssty2 n/a
61 TRCN0000189115 GCTGCAGAATTTCTCACGGTT pLKO.1 65 CDS 100% 2.640 1.320 Y LOC385534 n/a
62 TRCN0000255943 GGTGTCAAATATCACTTAAAT pLKO_005 666 CDS 100% 15.000 7.500 Y Gm21943 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011251338.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.