Transcript: Human XM_011518367.2

PREDICTED: Homo sapiens FA complementation group C (FANCC), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FANCC (2176)
Length:
3271
CDS:
831..2051

Additional Resources:

NCBI RefSeq record:
XM_011518367.2
NBCI Gene record:
FANCC (2176)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011518367.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000083371 CACGAGATCATTGGCTTTCTT pLKO.1 1932 CDS 100% 5.625 7.875 N FANCC n/a
2 TRCN0000358554 GAGTTTGTGTCCCACTTATTA pLKO_005 928 CDS 100% 15.000 12.000 N FANCC n/a
3 TRCN0000083369 CGAGTTTGTGTCCCACTTATT pLKO.1 927 CDS 100% 13.200 10.560 N FANCC n/a
4 TRCN0000083372 GTGAGAGAAATTGTCTGAGAA pLKO.1 1165 CDS 100% 4.950 3.960 N FANCC n/a
5 TRCN0000358556 ATTTGGTCATGAACCATTAAA pLKO_005 2427 3UTR 100% 15.000 10.500 N FANCC n/a
6 TRCN0000358555 TCAAGCTGCACATCTATTATT pLKO_005 2379 3UTR 100% 15.000 10.500 N FANCC n/a
7 TRCN0000083368 CCTGGAAATCATAGCCACTAT pLKO.1 1298 CDS 100% 4.950 3.465 N FANCC n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011518367.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00537 pDONR223 100% 72.7% 72.7% None 0_1ins456 n/a
2 ccsbBroad304_00537 pLX_304 0% 72.7% 72.7% V5 0_1ins456 n/a
3 TRCN0000481140 TTGCTTTTGGTTTAGGATGTACTA pLX_317 23.4% 72.7% 72.7% V5 0_1ins456 n/a
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