Construct: ORF TRCN0000481140

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012273.1_s317c1
Derived from:
ccsbBroadEn_00537
DNA Barcode:
TTGCTTTTGGTTTAGGATGTACTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FANCC (2176)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481140
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2176 FANCC FA complementation group C NM_000136.3 100% 100%
2 human 2176 FANCC FA complementation group C NM_001243743.1 100% 100%
3 human 2176 FANCC FA complementation group C XM_011518365.3 100% 100%
4 human 2176 FANCC FA complementation group C XM_024447451.1 100% 100%
5 human 2176 FANCC FA complementation group C XM_006717001.3 90.1% 90.1% 521_522ins165
6 human 2176 FANCC FA complementation group C NM_001243744.1 83.4% 79% (many diffs)
7 human 2176 FANCC FA complementation group C XM_006717002.4 80.7% 80.1% (many diffs)
8 human 2176 FANCC FA complementation group C XM_011518366.3 79.6% 79.3% 1330_1331insTC;1333delT;1335_1336ins338
9 human 2176 FANCC FA complementation group C XM_011518367.2 72.7% 72.7% 0_1ins456
10 human 2176 FANCC FA complementation group C XM_017014452.2 72.7% 72.7% 0_1ins456
11 human 2176 FANCC FA complementation group C XM_017014453.1 72.7% 72.7% 0_1ins456
12 human 2176 FANCC FA complementation group C XM_017014454.1 62.9% 62.9% 0_1ins456;65_66ins165
13 human 2176 FANCC FA complementation group C XM_006717004.4 61.2% 58.9% 994_995ins76;1026_1027ins572
14 human 2176 FANCC FA complementation group C XM_005251802.3 59.2% 58.9% 0_1ins670;2T>C;5_6insGCCATTTTGCT
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1740
ORF length:
1674
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tcaagattca gtagatcttt cttgtgatta tcagttttgg atgcagaagc
121tttctgtatg ggatcaggct tccactttgg aaacccagca agacacctgt cttcacgtgg
181ctcagttcca ggagttccta aggaagatgt atgaagcctt gaaagagatg gattctaata
241cagtcattga aagattcccc acaattggtc aactgttggc aaaagcttgt tggaatcctt
301ttattttagc atatgatgaa agccaaaaaa ttctaatatg gtgcttatgt tgtctaatta
361acaaagaacc acagaattct ggacaatcaa aacttaactc ctggatacag ggtgtattat
421ctcatatact ttcagcactc agatttgata aagaagttgc tcttttcact caaggtcttg
481ggtatgcacc tatagattac tatcctggtt tgcttaaaaa tatggtttta tcattagcgt
541ctgaactcag agagaatcat cttaatggat ttaacactca aaggcgaatg gctcccgagc
601gagtggcgtc cctgtcacga gtttgtgtcc cacttattac cctgacagat gttgaccccc
661tggtggaggc tctcctcatc tgtcatggac gtgaacctca ggaaatcctc cagccagagt
721tctttgaggc tgtaaacgag gccattttgc tgaagaagat ttctctcccc atgtcagctg
781tagtctgcct ctggcttcgg caccttccca gccttgaaaa agcaatgctg catctttttg
841aaaagctaat ctccagtgag agaaattgtc tgagaaggat cgaatgcttt ataaaagatt
901catcgctgcc tcaagcagcc tgccaccctg ccatattccg ggttgttgat gagatgttca
961ggtgtgcact cctggaaacc gatggggccc tggaaatcat agccactatt caggtgttta
1021cgcagtgctt tgtagaagct ctggagaaag caagcaagca gctgcggttt gcactcaaga
1081cctactttcc ttacacttct ccatctcttg ccatggtgct gctgcaagac cctcaagata
1141tccctcgggg acactggctc cagacactga agcatatttc tgaactgctc agagaagcag
1201ttgaagacca gactcatggg tcctgcggag gtccctttga gagctggttc ctgttcattc
1261acttcggagg atgggctgag atggtggcag agcaattact gatgtcggca gccgaacccc
1321ccacggccct gctgtggctc ttggccttct acTACGGCCC CCGTGATGGG AGGCAGCAGA
1381GAGCACAGAC TATGGTCCAG GTGAAGGCCG TGCTGGGCCA CCTCCTGGCA ATGTCCAGAA
1441GCAGCAGCCT CTCAGCCCAG GACCTGCAGA CGGTAGCAGG ACAGGGCACA GACACAGACC
1501TCAGAGCTCC TGCACAACAG CTGATCAGGC ACCTTCTCCT CAACTTCCTG CTCTGGGCTC
1561CTGGAGGCCA CACGATCGCC TGGGATGTCA TCACCCTGAT GGCTCACACT GCTGAGATAA
1621CTCACGAGAT CATTGGCTTT CTTGACCAGA CCTTGTACAG ATGGAATCGT CTTGGCATTG
1681AAAGCCCTAG ATCAGAAAAA CTGGCCCGAG AGCTCCTTAA AGAGCTGCGA ACTCAAGTCT
1741ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1801GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1861TTTATATATC TTGTGGAAAG GACGATTGCT TTTGGTTTAG GATGTACTAA CGCGTTAAGT
1921Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)