Transcript: Human XM_011526389.1

PREDICTED: Homo sapiens leukocyte immunoglobulin like receptor A2 (LILRA2), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LILRA2 (11027)
Length:
2176
CDS:
621..1775

Additional Resources:

NCBI RefSeq record:
XM_011526389.1
NBCI Gene record:
LILRA2 (11027)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011526389.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000438402 CAGATGCTACAGCTCACTCAG pLKO_005 1481 CDS 100% 4.050 2.835 N LILRA2 n/a
2 TRCN0000441476 CCAGAGAAGCCTACAAGATGC pLKO_005 1929 3UTR 100% 4.050 2.835 N LILRA2 n/a
3 TRCN0000434671 ATCACAGGACAGTTCTATGAC pLKO_005 1248 CDS 100% 4.950 2.970 N LILRA2 n/a
4 TRCN0000056846 CCAGGATTACACAGTGGAGAA pLKO.1 1836 3UTR 100% 4.050 2.025 Y LILRA2 n/a
5 TRCN0000056877 GTTCTGTATAAGGAGGGAGAA pLKO.1 1062 CDS 100% 4.050 2.025 Y LILRA1 n/a
6 TRCN0000056876 CCACACTTTCCTTCTGACCAA pLKO.1 1352 CDS 100% 2.640 1.320 Y LILRA1 n/a
7 TRCN0000056847 CGACAGATTTGTTCTGTATAA pLKO.1 1052 CDS 100% 1.320 0.660 Y LILRA2 n/a
8 TRCN0000056874 GAGAAGATGAACACCCACAAT pLKO.1 775 CDS 100% 4.950 2.475 Y LILRA1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011526389.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07730 pDONR223 100% 69.2% 59.8% None (many diffs) n/a
2 ccsbBroad304_07730 pLX_304 0% 69.2% 59.8% V5 (many diffs) n/a
3 ccsbBroadEn_02599 pDONR223 100% 60.5% 49.6% None (many diffs) n/a
4 ccsbBroad304_02599 pLX_304 0% 60.5% 49.6% V5 (many diffs) n/a
5 TRCN0000476912 AATATTGCGCGCAACCGAGCATCT pLX_317 19.2% 60.5% 49.6% V5 (many diffs) n/a
6 ccsbBroadEn_07729 pDONR223 100% 59.6% 51.5% None (many diffs) n/a
7 ccsbBroad304_07729 pLX_304 0% 59.6% 51.5% V5 (many diffs) n/a
8 TRCN0000478306 AGCCAAGCTCAGGCTTTGGACACT pLX_317 25.7% 59.6% 51.5% V5 (many diffs) n/a
9 ccsbBroadEn_07695 pDONR223 100% 51.2% 42.9% None (many diffs) n/a
10 ccsbBroad304_07695 pLX_304 0% 51.2% 42.9% V5 (many diffs) n/a
11 TRCN0000477615 ACCTCCGGAGCACCCTCCTCATAA pLX_317 20.9% 51.2% 42.9% V5 (many diffs) n/a
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