Transcript: Human XM_011532217.3

PREDICTED: Homo sapiens transient receptor potential cation channel subfamily C member 3 (TRPC3), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRPC3 (7222)
Length:
6950
CDS:
381..3194

Additional Resources:

NCBI RefSeq record:
XM_011532217.3
NBCI Gene record:
TRPC3 (7222)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011532217.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000433982 CTCAATCAGCCAACACGTTAT pLKO_005 2952 CDS 100% 10.800 15.120 N TRPC3 n/a
2 TRCN0000044030 CGCTGCCCAATATCACAGTTA pLKO.1 1837 CDS 100% 4.950 6.930 N TRPC3 n/a
3 TRCN0000044032 GCTTCATTAAGTCGTGTCAAA pLKO.1 1509 CDS 100% 4.950 6.930 N TRPC3 n/a
4 TRCN0000044031 CCCACCAGAGATACAGTATTT pLKO.1 2144 CDS 100% 13.200 10.560 N TRPC3 n/a
5 TRCN0000429255 ACTTCCGTTGTGCTCAAATAT pLKO_005 2493 CDS 100% 15.000 10.500 N TRPC3 n/a
6 TRCN0000415908 TACGTTCTTTATGGAATATAC pLKO_005 2541 CDS 100% 13.200 9.240 N TRPC3 n/a
7 TRCN0000422735 TCGTGTCAAACTTGCCATTAA pLKO_005 1520 CDS 100% 13.200 9.240 N Trpc3 n/a
8 TRCN0000415366 CCTTTATCATGTGAACCTTTA pLKO_005 3300 3UTR 100% 10.800 7.560 N TRPC3 n/a
9 TRCN0000414421 GATATCTCCAGCCTTCGTTAT pLKO_005 3075 CDS 100% 10.800 7.560 N Trpc3 n/a
10 TRCN0000044029 CCAGCCTTCGTTATGAACTTT pLKO.1 3082 CDS 100% 5.625 3.938 N TRPC3 n/a
11 TRCN0000044028 CCCAGTTTACATGGACTGAAA pLKO.1 1894 CDS 100% 4.950 3.465 N TRPC3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011532217.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01714 pDONR223 100% 90.5% 90.5% None 1_219del;2463_2510del n/a
2 ccsbBroad304_01714 pLX_304 0% 90.5% 90.5% V5 1_219del;2463_2510del n/a
3 TRCN0000476794 TATTATCTAGGACCGGTGTACCTC pLX_317 16.4% 90.5% 90.5% V5 1_219del;2463_2510del n/a
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