Transcript: Human XM_011536147.2

PREDICTED: Homo sapiens coiled-coil domain containing 170 (CCDC170), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CCDC170 (80129)
Length:
5321
CDS:
110..2275

Additional Resources:

NCBI RefSeq record:
XM_011536147.2
NBCI Gene record:
CCDC170 (80129)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011536147.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000128269 GCCGATTTAGTTCTCACAATA pLKO.1 2591 3UTR 100% 13.200 18.480 N CCDC170 n/a
2 TRCN0000127646 CCCTGAATCATGCACCCATAA pLKO.1 4744 3UTR 100% 10.800 7.560 N CCDC170 n/a
3 TRCN0000130279 CAAGGCCATTTACAGCTTCTT pLKO.1 2249 CDS 100% 4.950 3.465 N CCDC170 n/a
4 TRCN0000128224 CATTCACATCAGCATCACTTT pLKO.1 2177 CDS 100% 4.950 3.465 N CCDC170 n/a
5 TRCN0000127545 CTGGTTCGTCTTGAGAGCAAT pLKO.1 1529 CDS 100% 4.950 3.465 N CCDC170 n/a
6 TRCN0000130312 GAAGTGAACTTGCAGCAACTT pLKO.1 264 CDS 100% 4.950 3.465 N CCDC170 n/a
7 TRCN0000130439 GCATCTTACCATCAGGAACTT pLKO.1 1720 CDS 100% 4.950 3.465 N CCDC170 n/a
8 TRCN0000128984 GAAAGCTGAAATGGAGAGCTA pLKO.1 367 CDS 100% 2.640 1.848 N CCDC170 n/a
9 TRCN0000128879 GCAGTTAAACCACTATCGGAA pLKO.1 226 CDS 100% 2.640 1.848 N CCDC170 n/a
10 TRCN0000128192 CCAGATTATATCTGGTGGTAA pLKO.1 3300 3UTR 100% 0.495 0.347 N CCDC170 n/a
11 TRCN0000129187 CCTGTAAGAAACTTGCCTGTT pLKO.1 3266 3UTR 100% 4.050 2.430 N CCDC170 n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2877 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011536147.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09005 pDONR223 100% 97.5% 96.8% None (many diffs) n/a
2 ccsbBroad304_09005 pLX_304 0% 97.5% 96.8% V5 (many diffs) n/a
3 TRCN0000466028 GAAAATACCAAAACAACTCGCCCA pLX_317 13.4% 97.5% 96.8% V5 (many diffs) n/a
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