Construct: ORF TRCN0000468652

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004414.1_s317c1
Derived from:
ccsbBroadEn_06975
DNA Barcode:
TGATTTGTTTCGGCTACAATTTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SMARCC2 (6601)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468652
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6601 SMARCC2 SWI/SNF related, matrix ass... NM_139067.4 99.9% 99.9% 2721G>T
2 human 6601 SMARCC2 SWI/SNF related, matrix ass... XM_017019884.1 99.8% 99.8% 1742_1743insGCA;2718G>T
3 human 6601 SMARCC2 SWI/SNF related, matrix ass... NM_001130420.3 98% 98% 2721G>T;3316_3381del
4 human 6601 SMARCC2 SWI/SNF related, matrix ass... XM_005269104.1 97.9% 97.9% 1742_1743insGCA;2718G>T;3313_3378del
5 human 6601 SMARCC2 SWI/SNF related, matrix ass... XM_017019886.1 97.2% 97.1% 1649_1650ins93;2628G>T
6 human 6601 SMARCC2 SWI/SNF related, matrix ass... XM_017019885.1 95.3% 95.3% 1649_1650ins93;2628G>T;3223_3288del
7 human 6601 SMARCC2 SWI/SNF related, matrix ass... NM_001330288.2 90.7% 90.6% 2721G>T;3316_3660del
8 human 6601 SMARCC2 SWI/SNF related, matrix ass... XM_005269102.2 90.6% 90.6% 1742_1743insGCA;2718G>T;3313_3657del
9 human 6601 SMARCC2 SWI/SNF related, matrix ass... NM_003075.5 88.2% 88.1% 1649_1650ins93;2628G>T;3223_3567del
10 human 6601 SMARCC2 SWI/SNF related, matrix ass... XM_005269103.2 88.1% 88.1% 1647_1648ins96;2625G>T;3220_3564del
11 human 6601 SMARCC2 SWI/SNF related, matrix ass... XM_011538693.3 70.5% 70.5% 0_1ins753;1968G>T;2563_2907del
12 human 6601 SMARCC2 SWI/SNF related, matrix ass... XM_017019887.2 68% 68% (many diffs)
13 human 6601 SMARCC2 SWI/SNF related, matrix ass... XR_002957374.1 64.7% (many diffs)
14 human 6601 SMARCC2 SWI/SNF related, matrix ass... XR_002957373.1 61.2% (many diffs)
15 mouse 68094 Smarcc2 SWI/SNF related, matrix ass... NM_001114096.1 90.5% 96.7% (many diffs)
16 mouse 68094 Smarcc2 SWI/SNF related, matrix ass... XM_006514023.3 88.7% 94.8% (many diffs)
17 mouse 68094 Smarcc2 SWI/SNF related, matrix ass... XM_006514024.3 88.6% 94.7% (many diffs)
18 mouse 68094 Smarcc2 SWI/SNF related, matrix ass... NM_198160.2 87.8% 93.9% (many diffs)
19 mouse 68094 Smarcc2 SWI/SNF related, matrix ass... XM_006514020.3 82.2% 87.8% (many diffs)
20 mouse 68094 Smarcc2 SWI/SNF related, matrix ass... XM_006514021.3 82.1% 87.7% (many diffs)
21 mouse 68094 Smarcc2 SWI/SNF related, matrix ass... NM_001114097.1 79.7% 85.3% (many diffs)
22 mouse 68094 Smarcc2 SWI/SNF related, matrix ass... XM_006514022.3 79.7% 85.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3456
ORF length:
3390
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggtgcggaag aaggacggcg gccccaacgt gaagtactac gaggccgcgg
121acaccgtgac ccagttcgac aacgtgcggc tgtggctcgg caagaactac aagaagtata
181tacaagctga accacccacc aacaagtccc tgtctagcct ggttgtacag ttgctacaat
241ttcaggaaga agtttttggc aaacatgtca gcaatgcacc gctcactaaa ctgccgatca
301aatgtttcct agatttcaaa gcgggaggct ccttgtgcca cattcttgca gctgcctaca
361aattcaagag tgaccaggga tggcggcgtt acgatttcca gaatccatca cgcatggacc
421gcaatgtgga aatgtttatg accattgaga agtccttggt gcagaataat tgcctgtctc
481gacctaacat ttttctgtgc ccagaaattg agcccaaact actagggaaa ttaaaggaca
541ttatcaagag acaccaggga acagtcactg aggataagaa caatgcctcc catgttgtgt
601atcctgtccc ggggaatcta gaagaagagg aatgggtacg accagtcatg aagagggata
661agcaggttct tctgcactgg ggctactatc ctgacagtta cgacacgtgg atcccagcga
721gtgaaattga ggcatctgtg gaagatgctc caactcctga gaaacctagg aaggttcatg
781caaagtggat cctggacacc gacaccttca atgaatggat gaatgaggaa gactatgaag
841taaatgatga caaaaaccct gtctcccgcc gaaagaagat ttcagccaag acactgacag
901atgaggtgaa cagcccagat tcagatcgac gggacaagaa ggggggaaac tataagaaga
961ggaagcgctc cccctctcct tcaccaaccc cagaagcaaa gaagaaaaat gctaagaaag
1021gtccctcaac accttacact aagtcaaagc gtggccacag agaagaggag caagaagacc
1081tgacaaagga catggacgag ccctcaccag tccccaatgt agaagaggtg acacttccca
1141aaacagtcaa cacaaagaaa gactcagagt cggccccagt caaaggcggc accatgaccg
1201acctggatga acaggaagat gaaagcatgg agacgacggg caaggatgag gatgagaaca
1261gtacggggaa caagggagag cagaccaaga atccagacct gcatgaggac aatgtgactg
1321aacagaccca ccacatcatc attcccagct acgctgcctg gtttgactac aatagtgttc
1381atgccattga gcggagggct ctccccgagt tcttcaacgg caagaacaag tccaagactc
1441cagagatcta cctggcctat cgaaacttta tgattgacac ttaccgactg aacccccaag
1501agtatcttac ctctaccgcc tgccgccgaa acctagcggg tgatgtctgt gccatcatga
1561gggtccatgc cttcctagaa cagtggggtc ttattaacta ccaggtggat gctgagagtc
1621gaccaacccc aatggggcct ccgcctacct ctcacttcca tgtcttggct gacacaccat
1681cagggctggt gcctctgcag cccaagacac ctcagggccg ccaggttgat gctgatacca
1741aggctgggcg aaagggcaaa gagctggatg acctggtgcc agagacggct aagggcaagc
1801cagagctgca gacctctgct tcccaacaaa tgctcaactt tcctgacaaa ggcaaagaga
1861aaccaacaga catgcaaaac tttgggctgc gcacagacat gtacacaaaa aagaatgttc
1921cctccaagag caaggctgca gccagtgcca ctcgtgagtg gacagaacag gaaaccctgc
1981ttctcctgga ggcactggaa atgtacaaag atgactggaa caaagtgtcc gagcatgtgg
2041gaagccgcac acaggacgag tgcatcttgc attttcttcg tcttcccatt gaagacccat
2101acctggagga ctcagaggcc tccctaggcc ccctggccta ccaacccatc cccttcagtc
2161agtcgggcaa ccctgttatg agcactgttg ccttcctggc ctctgtcgtc gatccccgag
2221tcgcctctgc tgctgcaaag tcagccctag aggagttctc caaaatgaag gaagaggtac
2281ccacggcctt ggtggaggcc catgttcgaa aagtggaaga agcagccaaa gtaacaggca
2341aggcggaccc tgccttcggt ctggaaagca gtggcattgc aggaaccacc tctgatgagc
2401ctgagcggat tgaggagagc gggaatgacg aggctcgggt ggaaggccag gccacagatg
2461agaagaagga gcccaaggaa ccccgagaag gagggggtgc tatagaggag gaagcaaaag
2521agaaaaccag cgaggctccc aagaaggatg aggagaaagg gaaagaaggc gacagtgaga
2581aggagtccga gaagagtgat ggagacccaa tagtcgatcc tgagaaggag aaggagccaa
2641aggaagggca ggaggaagtg ctgaaggaag tggtggagtc tgagggggaa aggaagacaa
2701aggtggagcg ggacattggc gagggcaacc tctccaccgc tgctgccgcc gccctggccg
2761ccgccgcagt gaaagctaag cactttgctg ctgttgagga aaggaagatc aaatctttgg
2821tggccctgct ggtggagacc cagatgaaaa agttggagat caaacttcgg cactttgagg
2881agctggagac tatcatggac cgggagcgag aagcactgga gtatcagagg cagcagctcc
2941tggccgacag acaagccttc cacatggagc agctgaagta tgcggagatg agggctcggc
3001agcagcactt ccaacagatg caccaacagc agcagcagcc accaccagcc ctgcccccag
3061gctcccagcc taTCCCCCCA ACAGGGGCTG CTGGGCCACC CGCAGTCCAT GGCTTGGCTG
3121TGGCTCCAGC CTCTGTAGTC CCTGCTCCTG CTGGCAGTGG GGCCCCTCCA GGAAGTTTGG
3181GCCCTTCTGA ACAGATTGGG CAGGCAGGGT CAACTGCAGG GCCACAGCAG CAGCAACCAG
3241CTGGAGCCCC CCAGCCTGGG GCAGTCCCAC CAGGGGTTCC CCCCCCTGGA CCCCATGGCC
3301CCTCACCGTT CCCCAACCAA CAAACTCCTC CCTCAATGAT GCCAGGGGCA GTGCCAGGCA
3361GCGGGCACCC AGGCGTGGCG GACCCAGGCA CCCCCCTGCC TCCAGACCCC ACAGCCCCGA
3421GCCCAGGCAC GGTCACCCCT GTGCCACCTC CACAGTGCCC AACTTTCTTG TACAAAGTGG
3481TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
3541CTAGTCCGTA ACTTGAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA
3601TGATTTGTTT CGGCTACAAT TTTAACGCGT TAAGTCgaca atcaacctct ggattacaaa
3661atttgtgaaa gatt

Download FASTA (ORF) (Full)

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