Transcript: Human XM_011540987.2

PREDICTED: Homo sapiens solute carrier family 44 member 5 (SLC44A5), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC44A5 (204962)
Length:
6834
CDS:
326..2359

Additional Resources:

NCBI RefSeq record:
XM_011540987.2
NBCI Gene record:
SLC44A5 (204962)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011540987.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413254 ATGGTCCTTAGTTGGATATTT pLKO_005 956 CDS 100% 15.000 21.000 N SLC44A5 n/a
2 TRCN0000434300 ATACTTGGACCACCGTCTTAA pLKO_005 1801 CDS 100% 13.200 18.480 N SLC44A5 n/a
3 TRCN0000160276 CCAGAACACATTGTCTAAATT pLKO.1 1828 CDS 100% 15.000 10.500 N SLC44A5 n/a
4 TRCN0000161797 CTGGTGCATTCGCTACTTATT pLKO.1 1638 CDS 100% 13.200 9.240 N SLC44A5 n/a
5 TRCN0000159959 GCAACAAACATGGTTCACATT pLKO.1 1162 CDS 100% 4.950 3.465 N SLC44A5 n/a
6 TRCN0000163766 GCACTCCCAATGAGAACAAGA pLKO.1 447 CDS 100% 4.950 3.465 N SLC44A5 n/a
7 TRCN0000159726 GCACTTTAACAATAGGAAGTA pLKO.1 771 CDS 100% 4.950 3.465 N SLC44A5 n/a
8 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 4198 3UTR 100% 4.950 2.475 Y ERAP2 n/a
9 TRCN0000162397 CACAAGGACCAGCATCTTTAT pLKO.1 2118 CDS 100% 13.200 9.240 N SLC44A5 n/a
10 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4199 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011540987.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09832 pDONR223 100% 93.9% 94% None (many diffs) n/a
2 ccsbBroad304_09832 pLX_304 0% 93.9% 94% V5 (many diffs) n/a
3 TRCN0000469094 TCAGACATTCCTATTACTAAGATC pLX_317 19.6% 93.9% 94% V5 (many diffs) n/a
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