Transcript: Human XM_017011909.1

PREDICTED: Homo sapiens NudC domain containing 3 (NUDCD3), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NUDCD3 (23386)
Length:
4937
CDS:
720..1298

Additional Resources:

NCBI RefSeq record:
XM_017011909.1
NBCI Gene record:
NUDCD3 (23386)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017011909.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000138360 CCCAGCAAATTGGGATCACAT pLKO.1 1554 3UTR 100% 4.950 6.930 N NUDCD3 n/a
2 TRCN0000338452 CCCAGCAAATTGGGATCACAT pLKO_005 1554 3UTR 100% 4.950 6.930 N NUDCD3 n/a
3 TRCN0000137777 GCTTACCTTTGACTACCACCA pLKO.1 1133 CDS 100% 2.160 1.728 N NUDCD3 n/a
4 TRCN0000338451 GCTTACCTTTGACTACCACCA pLKO_005 1133 CDS 100% 2.160 1.728 N NUDCD3 n/a
5 TRCN0000133838 CCTGAGAAAGACTTGTCATTT pLKO.1 2973 3UTR 100% 13.200 9.240 N NUDCD3 n/a
6 TRCN0000338522 TGAGCAAGGTGGGCGAGTATT pLKO_005 1006 CDS 100% 13.200 9.240 N NUDCD3 n/a
7 TRCN0000338521 TCCCTAGGGAACCACCAATTC pLKO_005 524 5UTR 100% 10.800 7.560 N NUDCD3 n/a
8 TRCN0000137753 GCTCTCTGCTTGCTGTTGTTT pLKO.1 1628 3UTR 100% 5.625 3.938 N NUDCD3 n/a
9 TRCN0000137848 GAAGCTCACCCACAAGATCAA pLKO.1 932 CDS 100% 4.950 3.465 N NUDCD3 n/a
10 TRCN0000138890 GCCCATCGACATTGACAAGAT pLKO.1 1055 CDS 100% 4.950 3.465 N NUDCD3 n/a
11 TRCN0000137525 CCTTGGAACTTATGGCCCAAT pLKO.1 2332 3UTR 100% 4.050 2.835 N NUDCD3 n/a
12 TRCN0000137257 GAAAGTCCATGAGATGCTGAA pLKO.1 1187 CDS 100% 4.050 2.835 N NUDCD3 n/a
13 TRCN0000138791 GATTCAGGAGCAGTTCCAGAA pLKO.1 722 CDS 100% 4.050 2.835 N NUDCD3 n/a
14 TRCN0000134970 CCCTGCTTTAATAAACAGCAA pLKO.1 3291 3UTR 100% 2.640 1.848 N NUDCD3 n/a
15 TRCN0000338520 CCCTGCTTTAATAAACAGCAA pLKO_005 3291 3UTR 100% 2.640 1.848 N NUDCD3 n/a
16 TRCN0000133763 CGACATTGACAAGATCAACAA pLKO.1 1061 CDS 100% 4.950 2.970 N NUDCD3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017011909.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15758 pDONR223 0% 87.1% 86.8% None 0_1ins84;2T>G n/a
2 ccsbBroad304_15758 pLX_304 0% 87.1% 86.8% V5 0_1ins84;2T>G n/a
3 TRCN0000470223 GAACTAGAACGTTTAAATTAGATA pLX_317 76.1% 87.1% 86.8% V5 0_1ins84;2T>G n/a
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