Transcript: Human XM_017027469.1

PREDICTED: Homo sapiens lysophosphatidic acid receptor 2 (LPAR2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LPAR2 (9170)
Length:
1880
CDS:
238..1293

Additional Resources:

NCBI RefSeq record:
XM_017027469.1
NBCI Gene record:
LPAR2 (9170)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017027469.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000356949 ACCCGGTATGACTGGGTAATG pLKO_005 1673 3UTR 100% 10.800 15.120 N LPAR2 n/a
2 TRCN0000221132 GCGAGTCTGTCCACTATACAT pLKO.1 1196 CDS 100% 5.625 7.875 N LPAR2 n/a
3 TRCN0000221130 TCTACCTGAGTCTGATTCTTT pLKO.1 1716 3UTR 100% 5.625 3.938 N LPAR2 n/a
4 TRCN0000221131 CCTGGTCAAGACTGTTGTCAT pLKO.1 951 CDS 100% 4.950 3.465 N LPAR2 n/a
5 TRCN0000221133 CTTCTATAACAACAGTGGCAA pLKO.1 282 CDS 100% 2.640 1.848 N LPAR2 n/a
6 TRCN0000221134 GCTGACCAATCTGCTGGTCAT pLKO.1 378 CDS 100% 0.405 0.284 N LPAR2 n/a
7 TRCN0000356881 ACCATCGGCTTCTTCTATAAC pLKO_005 271 CDS 100% 13.200 7.920 N LPAR2 n/a
8 TRCN0000234210 TGATGGACTCCACCCTTTAAA pLKO_005 1274 CDS 100% 15.000 12.000 N Lpar2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017027469.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02097 pDONR223 100% 99.9% 100% None 864C>A n/a
2 ccsbBroad304_02097 pLX_304 0% 99.9% 100% V5 864C>A n/a
3 TRCN0000473080 ACCTCATCTAAACCTAAACACCCG pLX_317 23.6% 99.9% 100% V5 864C>A n/a
4 TRCN0000489888 CTCGCTGCGCCGGTAGTAAGGGCT pLX_317 36.8% 99.8% 100% V5 714C>T;864C>A n/a
5 TRCN0000489806 TCTAACGTCTTTTTCTTTCCTTAT pLX_317 39.5% 99.8% 100% V5 (not translated due to prior stop codon) 714C>T;864C>A n/a
Download CSV