Transcript: Mouse XM_017317688.2

PREDICTED: Mus musculus forkhead box P4 (Foxp4), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Foxp4 (74123)
Length:
3854
CDS:
256..2331

Additional Resources:

NCBI RefSeq record:
XM_017317688.2
NBCI Gene record:
Foxp4 (74123)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017317688.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000220225 CCAGTTTATCAAACACCTCAA pLKO.1 1236 CDS 100% 4.050 3.240 N FOXP4 n/a
2 TRCN0000274894 CCAGTTTATCAAACACCTCAA pLKO_005 1236 CDS 100% 4.050 3.240 N FOXP4 n/a
3 TRCN0000071484 CCCTCCTTCACTTAAGTTATT pLKO.1 3306 3UTR 100% 13.200 9.240 N Foxp4 n/a
4 TRCN0000071486 CAGAGCTGGAAACGATGAGAT pLKO.1 3567 3UTR 100% 4.950 3.465 N Foxp4 n/a
5 TRCN0000220227 CCAGAATCATGAGTTCTACAA pLKO.1 1653 CDS 100% 4.950 3.465 N FOXP4 n/a
6 TRCN0000274832 CCAGAATCATGAGTTCTACAA pLKO_005 1653 CDS 100% 4.950 3.465 N FOXP4 n/a
7 TRCN0000071485 CCGCAGGAGAAGTAATGACAA pLKO.1 1602 CDS 100% 4.950 3.465 N Foxp4 n/a
8 TRCN0000071487 CAGATGCAACAGTTGCAGCAA pLKO.1 826 CDS 100% 2.640 1.848 N Foxp4 n/a
9 TRCN0000071483 GCTGACGCTAAATGAGATTTA pLKO.1 1749 CDS 100% 13.200 7.920 N Foxp4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017317688.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09429 pDONR223 100% 86.7% 90.9% None (many diffs) n/a
2 TRCN0000467359 GCGGCTCATTGTCAACTTTCAGGT pLX_317 17.7% 85.2% 89.3% V5 (many diffs) n/a
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