Transcript: Mouse XM_017321600.1

PREDICTED: Mus musculus lipoma HMGIC fusion partner-like protein 4 (Lhfpl4), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lhfpl4 (269788)
Length:
5226
CDS:
712..1455

Additional Resources:

NCBI RefSeq record:
XM_017321600.1
NBCI Gene record:
Lhfpl4 (269788)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017321600.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216822 GTCTTGGGCTGTATGATCTTT pLKO.1 1129 CDS 100% 5.625 7.875 N Lhfpl4 n/a
2 TRCN0000175421 CGCCTAAAGAGACTTACTCAA pLKO.1 1835 3UTR 100% 4.950 6.930 N Lhfpl4 n/a
3 TRCN0000173396 GATTTCGTGGGCACTACAGTA pLKO.1 1354 CDS 100% 4.950 6.930 N Lhfpl4 n/a
4 TRCN0000193359 CTCAAACAGGAGAACAAAGAT pLKO.1 1336 CDS 100% 5.625 3.938 N Lhfpl4 n/a
5 TRCN0000194090 GAGCTCAAACAGGAGAACAAA pLKO.1 1333 CDS 100% 5.625 3.938 N Lhfpl4 n/a
6 TRCN0000166793 CATCTGCTTCGCCATCATCAA pLKO.1 801 CDS 100% 4.950 3.465 N LHFPL4 n/a
7 TRCN0000194558 GTTGCTTTCCATGGTGCTGAT pLKO.1 1008 CDS 100% 4.050 2.835 N Lhfpl4 n/a
8 TRCN0000176314 CTTCTTCGTGTTGCTTTCCAT pLKO.1 999 CDS 100% 3.000 2.100 N Lhfpl4 n/a
9 TRCN0000173129 CCAGATCCCATCTCCACATTT pLKO.1 3299 3UTR 100% 13.200 7.920 N Lhfpl4 n/a
10 TRCN0000128818 GAGAGAATGGAGAGAGAGAAA pLKO.1 3660 3UTR 100% 4.950 2.970 N PPP6R1 n/a
11 TRCN0000140585 GCCATCTTCACCATCTGCTTT pLKO.1 790 CDS 100% 4.950 2.475 Y LHFPL3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017321600.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13636 pDONR223 100% 88.2% 92.3% None (many diffs) n/a
2 ccsbBroad304_13636 pLX_304 0% 88.2% 92.3% V5 (many diffs) n/a
3 TRCN0000465624 GGTTGCTTGTGCATCGGCGCTTCT pLX_317 43.3% 88.2% 92.3% V5 (many diffs) n/a
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