Transcript: Human XM_024449426.1

PREDICTED: Homo sapiens serine/threonine kinase 24 (STK24), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
STK24 (8428)
Length:
2588
CDS:
566..1567

Additional Resources:

NCBI RefSeq record:
XM_024449426.1
NBCI Gene record:
STK24 (8428)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024449426.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000195637 CCCACTGCTAAGGAGTTATTG pLKO.1 1058 CDS 100% 13.200 18.480 N STK24 n/a
2 TRCN0000342500 CCCACTGCTAAGGAGTTATTG pLKO_005 1058 CDS 100% 13.200 18.480 N STK24 n/a
3 TRCN0000000641 GCAGGGTTTGTCATTAATAAT pLKO.1 2196 3UTR 100% 15.000 10.500 N STK24 n/a
4 TRCN0000194713 CAATTATTTCTCCTCTGTTTG pLKO.1 1368 CDS 100% 10.800 7.560 N STK24 n/a
5 TRCN0000199367 CCCTGGGCATAACAGCTATTG pLKO.1 882 CDS 100% 10.800 7.560 N STK24 n/a
6 TRCN0000342448 CCCTGGGCATAACAGCTATTG pLKO_005 882 CDS 100% 10.800 7.560 N STK24 n/a
7 TRCN0000194746 CCAAATATTATGGATCCTATC pLKO.1 519 5UTR 100% 6.000 4.200 N STK24 n/a
8 TRCN0000000643 GACAGGTACAAGAGATGGAAG pLKO.1 1136 CDS 100% 4.050 2.835 N STK24 n/a
9 TRCN0000342450 GACAGGTACAAGAGATGGAAG pLKO_005 1136 CDS 100% 4.050 2.835 N STK24 n/a
10 TRCN0000000642 ACAGAGACATTAAAGCGGCCA pLKO.1 696 CDS 100% 0.540 0.378 N STK24 n/a
11 TRCN0000000644 TGGACAGAAATAAGATGAAAG pLKO.1 1311 CDS 100% 10.800 6.480 N STK24 n/a
12 TRCN0000000645 TGCAGAGTTGAAGGAGAAGAG pLKO.1 1387 CDS 100% 4.050 2.430 N STK24 n/a
13 TRCN0000342451 TGCAGAGTTGAAGGAGAAGAG pLKO_005 1387 CDS 100% 4.050 2.430 N STK24 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024449426.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14893 pDONR223 0% 77.1% 77.2% None 0_1ins294;774G>A n/a
2 ccsbBroad304_14893 pLX_304 0% 77.1% 77.2% V5 0_1ins294;774G>A n/a
3 TRCN0000469460 CTTGGGCACCAGGCGCTTACTTTC pLX_317 25.5% 77.1% 77.2% V5 0_1ins294;774G>A n/a
4 ccsbBroadEn_07238 pDONR223 100% 77.1% 77% None 0_1ins294;203C>A;774G>A n/a
5 ccsbBroad304_07238 pLX_304 0% 77.1% 77% V5 0_1ins294;203C>A;774G>A n/a
6 TRCN0000480096 CACCCCGGTGCCGAGCGGTCCGCT pLX_317 29.1% 77.1% 77% V5 0_1ins294;203C>A;774G>A n/a
7 TRCN0000491633 CGTCGTACCCTGACTGTAAATATA pLX_317 25.8% 77.1% 77% V5 (not translated due to prior stop codon) 0_1ins294;472A>G;774G>A n/a
Download CSV

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.