Transcript: Human XR_001738637.2

PREDICTED: Homo sapiens cAMP responsive element binding protein 1 (CREB1), transcript variant X13, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CREB1 (1385)
Length:
8132
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001738637.2
NBCI Gene record:
CREB1 (1385)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001738637.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000226467 ACGGTGCCAACTCCAATTTAC pLKO_005 644 3UTR 100% 13.200 18.480 N CREB1 n/a
2 TRCN0000226466 ACATTAGCCCAGGTATCTATG pLKO_005 284 3UTR 100% 10.800 15.120 N CREB1 n/a
3 TRCN0000011085 CAGTGGATAGTGTAACTGATT pLKO.1 480 3UTR 100% 4.950 6.930 N CREB1 n/a
4 TRCN0000007308 GCTCGATAAATCTAACAGTTA pLKO.1 3162 3UTR 100% 4.950 6.930 N CREB1 n/a
5 TRCN0000007310 CGTCTAATGAAGAACAGGGAA pLKO.1 1598 3UTR 100% 2.640 3.696 N CREB1 n/a
6 TRCN0000226469 ACCAATCCCTTGAGTTATATA pLKO_005 2596 3UTR 100% 15.000 12.000 N CREB1 n/a
7 TRCN0000218546 ACGTACAAACATACCAGATTC pLKO_005 1476 3UTR 100% 10.800 8.640 N CREB1 n/a
8 TRCN0000226468 ACAGCACCCACTAGCACTATT pLKO_005 1499 3UTR 100% 13.200 9.240 N CREB1 n/a
9 TRCN0000378139 CAATACAGCTGGCTAACAATG pLKO_005 708 3UTR 100% 10.800 7.560 N CREB1 n/a
10 TRCN0000304386 CAGTTCAGATTTCAACTATTG pLKO_005 435 3UTR 100% 10.800 7.560 N Creb1 n/a
11 TRCN0000356000 GGAGTCAGTGGATAGTGTAAC pLKO_005 475 3UTR 100% 10.800 7.560 N CREB1 n/a
12 TRCN0000096629 GCCTGAAAGCAACTACAGAAT pLKO.1 1876 3UTR 100% 4.950 3.465 N Creb1 n/a
13 TRCN0000301658 GCCTGAAAGCAACTACAGAAT pLKO_005 1876 3UTR 100% 4.950 3.465 N Creb1 n/a
14 TRCN0000356046 GCCTGAAAGCAACTACAGAAT pLKO_005 1876 3UTR 100% 4.950 3.465 N CREB1 n/a
15 TRCN0000007309 GCAAACATTAACCATGACCAA pLKO.1 751 3UTR 100% 2.640 1.848 N CREB1 n/a
16 TRCN0000096631 CAGCAGCTCATGCAACATCAT pLKO.1 306 3UTR 100% 4.950 2.475 Y Creb1 n/a
17 TRCN0000301735 CAGCAGCTCATGCAACATCAT pLKO_005 306 3UTR 100% 4.950 2.475 Y Creb1 n/a
18 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 3285 3UTR 100% 4.950 2.475 Y ERAP2 n/a
19 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 3286 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001738637.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00360 pDONR223 100% 12% None (many diffs) n/a
2 ccsbBroad304_00360 pLX_304 26.2% 12% V5 (many diffs) n/a
3 TRCN0000475150 GGTGTGTATCCTCGACAATTCGGG pLX_317 58.1% 12% V5 (many diffs) n/a
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