Construct: ORF ccsbBroadEn_00360

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000135.1_s300c1, BRDN0000392649
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CREB1 (1385)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1385 CREB1 cAMP responsive element bin... NM_001371426.1 100% 100%
2 human 1385 CREB1 cAMP responsive element bin... NM_134442.5 100% 100%
3 human 1385 CREB1 cAMP responsive element bin... NM_001371427.1 95.8% 95.8% 258_259ins42
4 human 1385 CREB1 cAMP responsive element bin... NM_004379.5 95.8% 95.8% 258_259ins42
5 human 1385 CREB1 cAMP responsive element bin... XM_011510648.3 89.2% 86.2% (many diffs)
6 human 1385 CREB1 cAMP responsive element bin... XM_011510650.3 88.2% 88.2% 0_1ins120
7 human 1385 CREB1 cAMP responsive element bin... XM_017003399.2 85.1% 82.1% (many diffs)
8 human 1385 CREB1 cAMP responsive element bin... NM_001371428.1 84.1% 84.1% 0_1ins120;138_139ins42
9 human 1385 CREB1 cAMP responsive element bin... XM_011510646.3 83.1% 87.2% 880_965del;1008_1009ins101
10 human 1385 CREB1 cAMP responsive element bin... NM_001320793.2 68% 67.4% (many diffs)
11 human 1385 CREB1 cAMP responsive element bin... XM_017003401.2 29.8% 29% (many diffs)
12 human 1385 CREB1 cAMP responsive element bin... XR_241292.2 13.3% 1_200del;930_992del;1287_7662del
13 human 1385 CREB1 cAMP responsive element bin... XR_241290.2 13.1% 1_200del;928_1105del;1402_7777del
14 human 1385 CREB1 cAMP responsive element bin... XR_001738636.2 12.4% 1_200del;928_1521del;1818_8193del
15 human 1385 CREB1 cAMP responsive element bin... XR_001738637.2 12% (many diffs)
16 human 1385 CREB1 cAMP responsive element bin... NR_135473.2 11.9% 1_181del;1205_8541del
17 human 1385 CREB1 cAMP responsive element bin... NR_163947.1 11.6% 1_65del;323_324ins42;1047_8383del
18 human 1385 CREB1 cAMP responsive element bin... NR_163946.1 11.4% 1_181del;439_440ins42;1163_8499del
19 mouse 12912 Creb1 cAMP responsive element bin... NM_009952.2 95.3% 99.7% (many diffs)
20 mouse 12912 Creb1 cAMP responsive element bin... XM_006495650.3 95.3% 99.7% (many diffs)
21 mouse 12912 Creb1 cAMP responsive element bin... XM_017314080.1 95.3% 99.7% (many diffs)
22 mouse 12912 Creb1 cAMP responsive element bin... NM_133828.2 91.3% 95.6% (many diffs)
23 mouse 12912 Creb1 cAMP responsive element bin... XM_006495651.3 91.3% 95.6% (many diffs)
24 mouse 12912 Creb1 cAMP responsive element bin... XM_017314099.1 91.3% 95.6% (many diffs)
25 mouse 12912 Creb1 cAMP responsive element bin... XM_006495652.3 84% 88.2% (many diffs)
26 mouse 12912 Creb1 cAMP responsive element bin... NM_001037726.1 80% 84.1% (many diffs)
27 mouse 12912 Creb1 cAMP responsive element bin... XM_006495653.3 77.9% 81.5% (many diffs)
28 mouse 12912 Creb1 cAMP responsive element bin... XM_006495654.3 73.9% 77.4% (many diffs)
29 mouse 12912 Creb1 cAMP responsive element bin... XM_011238424.2 37.2% 39% (many diffs)
30 mouse 12912 Creb1 cAMP responsive element bin... XM_011238425.2 37.2% 39% (many diffs)
31 mouse 12912 Creb1 cAMP responsive element bin... XM_006495655.3 28.5% 29% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1089
ORF length:
1023
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CATGGAATCT GGAGCCGAGA ACCAGCAGAG TGGAGATGCA GCTGTAACAG
121AAGCTGAAAA CCAACAAATG ACAGTTCAAG CCCAGCCACA GATTGCCACA TTAGCCCAGG
181TATCTATGCC AGCAGCTCAT GCAACATCAT CTGCTCCCAC CGTAACTCTA GTACAGCTGC
241CCAATGGGCA GACAGTTCAA GTCCATGGAG TCATTCAGGC GGCCCAGCCA TCAGTTATTC
301AGTCTCCACA AGTCCAAACA GTTCAGTCTT CCTGTAAGGA CTTAAAAAGA CTTTTCTCCG
361GAACACAGAT TTCAACTATT GCAGAAAGTG AAGATTCACA GGAGTCAGTG GATAGTGTAA
421CTGATTCCCA AAAGCGAAGG GAAATTCTTT CAAGGAGGCC TTCCTACAGG AAAATTTTGA
481ATGACTTATC TTCTGATGCA CCAGGAGTGC CAAGGATTGA AGAAGAGAAG TCTGAAGAGG
541AGACTTCAGC ACCTGCCATC ACCACTGTAA CGGTGCCAAC TCCAATTTAC CAAACTAGCA
601GTGGACAGTA TATTGCCATT ACCCAGGGAG GAGCAATACA GCTGGCTAAC AATGGTACCG
661ATGGGGTACA GGGCCTGCAA ACATTAACCA TGACCAATGC AGCAGCCACT CAGCCGGGTA
721CTACCATTCT ACAGTATGCA CAGACCACTG ATGGACAGCA GATCTTAGTG CCCAGCAACC
781AAGTTGTTGT TCAAGCTGCC TCTGGAGACG TACAAACATA CCAGATTCGC ACAGCACCCA
841CTAGCACTAT TGCCCCTGGA GTTGTTATGG CATCCTCCCC AGCACTTCCT ACACAGCCTG
901CTGAAGAAGC AGCACGAAAG AGAGAGGTCC GTCTAATGAA GAACAGGGAA GCAGCTCGAG
961AGTGTCGTAG AAAGAAGAAA GAATATGTGA AATGTTTAGA AAACAGAGTG GCAGTGCTTG
1021AAAATCAAAA CAAGACATTG ATTGAGGAGC TAAAAGCACT TAAGGACCTT TACTGCCACA
1081AATCAGATTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1141tttgttgcaa cgaac

Download FASTA (ORF) (Full)