Transcript: Human XR_001747076.1

PREDICTED: Homo sapiens EBF transcription factor 3 (EBF3), transcript variant X9, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
EBF3 (253738)
Length:
5076
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001747076.1
NBCI Gene record:
EBF3 (253738)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001747076.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437156 GGTGCCACCGTCATCATAATT pLKO_005 1311 3UTR 100% 15.000 21.000 N EBF3 n/a
2 TRCN0000432810 AGTCGGCTACAGTCGCAATAC pLKO_005 1850 3UTR 100% 10.800 15.120 N Ebf3 n/a
3 TRCN0000432859 AGTCGGCTACAGTCGCAATAC pLKO_005 1850 3UTR 100% 10.800 15.120 N EBF3 n/a
4 TRCN0000435093 GTTCGCCTCATAGATTCAATG pLKO_005 888 3UTR 100% 10.800 15.120 N EBF3 n/a
5 TRCN0000151259 CGTGACAAATCCTAGTAGATT pLKO.1 3827 3UTR 100% 5.625 7.875 N EBF3 n/a
6 TRCN0000150804 GCAAGTTGTATTCGGAACTAT pLKO.1 1355 3UTR 100% 5.625 7.875 N EBF3 n/a
7 TRCN0000081571 CTCATAGATTCAATGACCAAA pLKO.1 894 3UTR 100% 4.950 6.930 N Ebf3 n/a
8 TRCN0000156191 CCATAGATTACGGCTTTCAGA pLKO.1 1534 3UTR 100% 3.000 4.200 N EBF3 n/a
9 TRCN0000081570 CCTCATAGATTCAATGACCAA pLKO.1 893 3UTR 100% 2.640 3.696 N Ebf3 n/a
10 TRCN0000152234 CTAGCATGAATGGATATGGAA pLKO.1 1942 3UTR 100% 3.000 2.400 N EBF3 n/a
11 TRCN0000418825 ATGGTTGTGTATCTCTATAAT pLKO_005 2810 3UTR 100% 15.000 10.500 N Ebf3 n/a
12 TRCN0000436557 CAACCTCCGGAAATCCAATTT pLKO_005 686 3UTR 100% 13.200 9.240 N Ebf3 n/a
13 TRCN0000155217 GCAGTTGCTAAGGGACTTTAT pLKO.1 3438 3UTR 100% 13.200 9.240 N EBF3 n/a
14 TRCN0000418422 GTCTTGGCCATGTCTAGTAAT pLKO_005 2684 3UTR 100% 13.200 9.240 N EBF3 n/a
15 TRCN0000155424 CCGTGACAAATCCTAGTAGAT pLKO.1 3826 3UTR 100% 4.950 3.465 N EBF3 n/a
16 TRCN0000157720 CGGAGATTCCAGGTTGTTGTA pLKO.1 1131 3UTR 100% 4.950 3.465 N EBF3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001747076.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05291 pDONR223 100% 32.5% None 1_506del;2128_2345del;2378_5076del n/a
2 ccsbBroad304_05291 pLX_304 0% 32.5% V5 1_506del;2128_2345del;2378_5076del n/a
3 TRCN0000481616 TGGACCGGGGCACACATATATTGC pLX_317 29.4% 32.5% V5 1_506del;2128_2345del;2378_5076del n/a
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