Transcript: Human XR_002956216.1

PREDICTED: Homo sapiens uncharacterized LOC101929201 (LOC101929201), ncRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC101929201 (101929201)
Length:
3612
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002956216.1
NBCI Gene record:
LOC101929201 (101929201)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002956216.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 1595 3UTR 100% 4.050 2.025 Y P3H4 n/a
2 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 1595 3UTR 100% 4.050 2.025 Y ORAI2 n/a
3 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 1595 3UTR 100% 4.050 2.025 Y P3H4 n/a
4 TRCN0000164801 CCTCCCAAAGTACTGGGATTA pLKO.1 148 3UTR 100% 1.080 0.540 Y MAPKAPK5-AS1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002956216.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12783 pDONR223 100% 3.1% None (many diffs) n/a
2 ccsbBroad304_12783 pLX_304 0% 3.1% V5 (many diffs) n/a
3 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% 3.1% V5 (many diffs) n/a
4 ccsbBroadEn_10261 pDONR223 100% 1.7% None (many diffs) n/a
5 ccsbBroad304_10261 pLX_304 0% 1.7% V5 (many diffs) n/a
6 TRCN0000492083 TTATAGGCCCAGAGCACTACCAAC pLX_317 100% 1.7% V5 (many diffs) n/a
Download CSV