Transcript: Human XR_002957063.1

PREDICTED: Homo sapiens uncharacterized LOC105376412 (LOC105376412), transcript variant X1, ncRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC105376412 (105376412)
Length:
2008
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002957063.1
NBCI Gene record:
LOC105376412 (105376412)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002957063.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000204533 CCTCCCAAAGTGCTGGAATTA pLKO.1 1314 3UTR 100% 13.200 6.600 Y LRRC74B n/a
2 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 1280 3UTR 100% 4.950 2.475 Y LOC387873 n/a
3 TRCN0000157407 GATCTCGGCTTACTGCAACTT pLKO.1 1123 3UTR 100% 4.950 2.475 Y GTF2IRD2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002957063.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10792 pDONR223 100% 10.7% None (many diffs) n/a
2 ccsbBroad304_10792 pLX_304 0% 10.7% V5 (many diffs) n/a
3 TRCN0000472287 GCCTGGAGAGCTTTCCTCGTCACG pLX_317 100% 10.7% V5 (many diffs) n/a
4 ccsbBroadEn_12783 pDONR223 100% 9.6% None (many diffs) n/a
5 ccsbBroad304_12783 pLX_304 0% 9.6% V5 (many diffs) n/a
6 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% 9.6% V5 (many diffs) n/a
7 ccsbBroadEn_15487 pDONR223 0% 7.8% None (many diffs) n/a
8 ccsbBroad304_15487 pLX_304 0% 7.8% V5 (many diffs) n/a
9 TRCN0000473708 TAGCATCGTTGCACGCGCACGTTG pLX_317 100% 7.8% V5 (many diffs) n/a
10 ccsbBroadEn_10261 pDONR223 100% 3.1% None (many diffs) n/a
11 ccsbBroad304_10261 pLX_304 0% 3.1% V5 (many diffs) n/a
12 TRCN0000492083 TTATAGGCCCAGAGCACTACCAAC pLX_317 100% 3.1% V5 (many diffs) n/a
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