Transcript: Human XR_002959542.1

PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta (PIK3CB), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PIK3CB (5291)
Length:
4331
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002959542.1
NBCI Gene record:
PIK3CB (5291)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002959542.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000010018 GTCAGCGGGAGAGTAGAATAT pLKO.1 593 3UTR 100% 13.200 18.480 N PIK3CB n/a
2 TRCN0000010024 TATCCTGTAGCGTGGGTAAAT pLKO.1 1151 3UTR 100% 13.200 18.480 N PIK3CB n/a
3 TRCN0000039979 CCACTAATTCAGTTCCAGTAT pLKO.1 629 3UTR 100% 4.950 6.930 N PIK3CB n/a
4 TRCN0000010025 CGACAAGACTGCCGAGAGATT pLKO.1 1529 3UTR 100% 4.950 6.930 N PIK3CB n/a
5 TRCN0000039978 CGTGGGTAAATACGATGGTTT pLKO.1 1161 3UTR 100% 4.950 6.930 N PIK3CB n/a
6 TRCN0000194877 CCACATTGACTTTGGACATAT pLKO.1 2547 3UTR 100% 13.200 9.240 N PIK3CB n/a
7 TRCN0000039981 CCCAATGTTCAACCTCCTTAT pLKO.1 43 3UTR 100% 10.800 7.560 N PIK3CB n/a
8 TRCN0000018340 GATTGTGCCCTCTCTAGATTC pLKO.1 1802 3UTR 100% 10.800 7.560 N PIK3CB n/a
9 TRCN0000196367 GCTACTGTGTAGCTTCTTATG pLKO.1 2465 3UTR 100% 10.800 7.560 N PIK3CB n/a
10 TRCN0000039982 GCGGGAGAGTAGAATATGTTT pLKO.1 597 3UTR 100% 5.625 3.938 N PIK3CB n/a
11 TRCN0000194825 CCTCTAAATATCAGACCATCA pLKO.1 1110 3UTR 100% 4.050 2.835 N PIK3CB n/a
12 TRCN0000009860 CATTCAGCTGAACAGTAGCAA pLKO.1 2331 3UTR 100% 3.000 2.100 N PIK3CB n/a
13 TRCN0000010016 AGCACTTGGTAATCGGAGGAT pLKO.1 1834 3UTR 100% 2.640 1.848 N PIK3CB n/a
14 TRCN0000010017 CCCATGTGTTATCCTCTCAGA pLKO.1 2034 3UTR 100% 2.640 1.848 N PIK3CB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002959542.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01202 pDONR223 100% 64.4% None 0_1ins155;1879_1880ins100;2956_4331del n/a
2 ccsbBroad304_01202 pLX_304 4.2% 64.4% V5 0_1ins155;1879_1880ins100;2956_4331del n/a
3 TRCN0000467602 TCTTCGCAGCGGTTACTCCATTGC pLX_317 14.5% 64.4% V5 0_1ins155;1879_1880ins100;2956_4331del n/a
4 TRCN0000491617 TGTCAAAACTACAACGGAACACGC pLX_317 12.2% 64.4% V5 (not translated due to prior stop codon) 0_1ins155;1879_1880ins100;2956_4331del n/a
5 ccsbBroad304_14760 pLX_304 21.2% 64% V5 (not translated due to prior stop codon) (many diffs) n/a
6 ccsbBroadEn_14760 pDONR223 51.7% 63.9% None (many diffs) n/a
7 TRCN0000474394 GTGTCCGTATATGGCGTGCTCTTT pLX_317 13.2% 63.9% V5 (not translated due to prior stop codon) (many diffs) n/a
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