Construct: ORF TRCN0000465769
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016150.1_s317c1
- Derived from:
- ccsbBroadEn_12938
- DNA Barcode:
- GCGACGTTTCATCACCCAGACTTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF468 (90333)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465769
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_018260.2 | 17.2% | 7.1% | (many diffs) |
| 2 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_001172655.1 | 15% | 6.2% | (many diffs) |
| 3 | human | 55762 | ZNF701 | zinc finger protein 701 | XM_011527092.1 | 15% | 6.2% | (many diffs) |
| 4 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026800.2 | 11.6% | 5% | (many diffs) |
| 5 | human | 388559 | ZNF888 | zinc finger protein 888 | NM_001310127.1 | 11% | 4.8% | (many diffs) |
| 6 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_005259451.5 | 11% | 4.8% | (many diffs) |
| 7 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026799.2 | 11% | 4.8% | (many diffs) |
| 8 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026798.2 | 9.5% | 4.2% | (many diffs) |
| 9 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753718.2 | 8% | (many diffs) | |
| 10 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753717.2 | 6.7% | (many diffs) | |
| 11 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 6.7% | (many diffs) | |
| 12 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 6.3% | (many diffs) | |
| 13 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102301.2 | 5.9% | 1_2035del;2315_4660del | |
| 14 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102300.2 | 5.8% | 1_2134del;2414_4759del | |
| 15 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102299.2 | 5.8% | 1_2153del;2433_4778del | |
| 16 | human | 7576 | ZNF28 | zinc finger protein 28 | NR_163139.1 | 4.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 369
- ORF length:
- 279
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGAATGTGGC AAGGTTTTTA ATCAAAAAGC 121 AACCTTTGCA CATCACCATA GACTTCATAC TGGAGAGAAA CCTTACAAAT GGGAGGAATG 181 TGACAAAAGT TTTCAGTTGT AAATCAAACC TTAAAACACA TAAGAAAATT CACATTGAAG 241 AGAAACCATA CAGAGGTAAG GTTTGTGACA AGGTTTTTGC ATATAATGCA TATCTGGCAA 301 AACATACTAG AATTCACACT GGAGAGAAAC TCATTATAAG TGTAATGAGT GTGGCAAGAC 361 CGTTGGTCAA AATTCACACC TTGTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 421 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 481 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAG CGACGTTTCA 541 TCACCCAGAC TTTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 601 att