Construct: ORF TRCN0000466457
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003528.1_s317c1
- Derived from:
- ccsbBroadEn_08866
- DNA Barcode:
- AACTACTTCACAGAAGCTGCCCAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- S100PBP (64766)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466457
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64766 | S100PBP | S100P binding protein | NM_001256121.1 | 99.9% | 99.7% | 1224T>A |
| 2 | human | 64766 | S100PBP | S100P binding protein | NM_022753.4 | 99.9% | 99.7% | 1224T>A |
| 3 | human | 64766 | S100PBP | S100P binding protein | XM_011541961.2 | 99.9% | 99.7% | 1224T>A |
| 4 | human | 64766 | S100PBP | S100P binding protein | XM_011541962.2 | 99.9% | 99.7% | 1224T>A |
| 5 | human | 64766 | S100PBP | S100P binding protein | XM_024449175.1 | 99.9% | 99.7% | 1224T>A |
| 6 | human | 64766 | S100PBP | S100P binding protein | XM_024449176.1 | 99.9% | 99.7% | 1224T>A |
| 7 | human | 64766 | S100PBP | S100P binding protein | XM_024449177.1 | 99.9% | 99.7% | 1224T>A |
| 8 | human | 64766 | S100PBP | S100P binding protein | XM_017002098.2 | 99.6% | 99.5% | 831_832insCAG;1221T>A |
| 9 | human | 64766 | S100PBP | S100P binding protein | XM_011541963.2 | 83.8% | 83.4% | (many diffs) |
| 10 | human | 64766 | S100PBP | S100P binding protein | XR_001737365.2 | 78.6% | (many diffs) | |
| 11 | human | 64766 | S100PBP | S100P binding protein | NR_135107.1 | 28.9% | 1_119del;1143_1170del;1371_4226delinsA | |
| 12 | human | 64766 | S100PBP | S100P binding protein | NR_135106.1 | 28.5% | (many diffs) | |
| 13 | human | 64766 | S100PBP | S100P binding protein | XR_946740.3 | 28.1% | 1_254del;1278_1305del;1506_4348delinsA | |
| 14 | human | 64766 | S100PBP | S100P binding protein | XR_001737364.2 | 28% | 1_254del;1276_1321del;1524_4366delinsA | |
| 15 | human | 64766 | S100PBP | S100P binding protein | XR_001737363.2 | 27.9% | 1_254del;1277_1327del;1529_4371delinsA |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1290
- ORF length:
- 1224
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgat gtgctcacgg gtgccctctg aacagtcttc tggtacctct ctcttgccta 121 aagacggtgc cccattttct tgggattcct tggatgagga tggattggat gactccttgc 181 tggagctgtc agagggagaa gaagatgatg gtgatgtaaa ttacacagag gaagagattg 241 atgcactgtt gaaggaagat gacccatcat atgagcagtc ttctggggaa gatgatggtg 301 ggcatgttga gaagggagaa agagggagtc aaattctact tgatactccc cgagagaaaa 361 attcatcgta cagcctggga ccagtagctg agactcctga cctcttcaaa ctacctcagc 421 taagtacatc aagtggtcat ggaccagctc atactaaacc attaaacaga cgctctgtac 481 tagaaaagaa tcttataaaa gtaactgttg caccatttaa tccaacagtt tgtgatgctc 541 tgcttgataa ggacgagact gattcgtcca aagatactga aaaactctct tcccttggag 601 aagagatgag agaagatggt cttagcccaa atgaaagcaa actttgtact gaatctgaag 661 ggatcagccc caataactct gcctggaatg ggccccagct ctcttcttca aacaataact 721 ttcaacagac tgtctctgat aaaaatatgc ctgacagtga gaaccctacg tctgtattct 781 ctcggatctc agaccattca gagactccta atatggagtt atcctgcaga aatggtggtt 841 cacacaagtc aagttgtgaa atgagatctc tggttgtttc cacctcatca aacaaacagg 901 atgttcttaa caaggattct gggaagatga aaggccatga gagaagacta ggcaaagtca 961 ttcctgttct acaaactaag accaggacta atgttccgac gttttcacag tcaaatctag 1021 aacagcagaa gcagctttat cTCAGGAGTG TCATTGCTCA TATAGAAGAC CCAGAGGACA 1081 CTAACCAAGG TATCTCGGGG GAGCTTTGTG CCTTGATGGA TCAAGTTCAT CATATGCAGC 1141 ACTCAAAATG GCAGCATCCT TCGGACCTCA CCACGCGAAA CTACGCCCGC CGACAGAAAC 1201 ATCTGCAAAG ATACAGTCTG ACTCAGTGGG TTGACAGGAA CATGCGAAGC CACCATCGGT 1261 TCCAGCGTCT CCCAGACTTC TCGTACAGAT ACCCAACTTT CTTGTACAAA GTGGTTGATA 1321 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 1381 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAAACTA 1441 CTTCACAGAA GCTGCCCACA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 1501 tgaaagatt