Construct: ORF TRCN0000467106
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012075.1_s317c1
- Derived from:
- ccsbBroadEn_03676
- DNA Barcode:
- AGCGATGATACCCTAACGCCTAGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LMO3 (55885)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467106
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55885 | LMO3 | LIM domain only 3 | NM_001001395.2 | 100% | 100% | |
| 2 | human | 55885 | LMO3 | LIM domain only 3 | NM_001243609.1 | 100% | 100% | |
| 3 | human | 55885 | LMO3 | LIM domain only 3 | NM_001243610.1 | 100% | 100% | |
| 4 | human | 55885 | LMO3 | LIM domain only 3 | NM_018640.5 | 100% | 100% | |
| 5 | human | 55885 | LMO3 | LIM domain only 3 | XM_006719110.4 | 100% | 100% | |
| 6 | human | 55885 | LMO3 | LIM domain only 3 | XM_006719111.2 | 100% | 100% | |
| 7 | human | 55885 | LMO3 | LIM domain only 3 | XM_011520762.1 | 100% | 100% | |
| 8 | human | 55885 | LMO3 | LIM domain only 3 | XM_011520763.1 | 100% | 100% | |
| 9 | human | 55885 | LMO3 | LIM domain only 3 | XM_024449058.1 | 100% | 100% | |
| 10 | human | 55885 | LMO3 | LIM domain only 3 | NM_001243611.1 | 92.9% | 92.9% | 1_33del |
| 11 | human | 55885 | LMO3 | LIM domain only 3 | NM_001243612.1 | 88.9% | 88.9% | 1_54del |
| 12 | human | 55885 | LMO3 | LIM domain only 3 | NM_001243613.1 | 83.3% | 77.9% | (many diffs) |
| 13 | human | 4004 | LMO1 | LIM domain only 1 | XM_011520098.2 | 80% | 89.6% | (many diffs) |
| 14 | human | 4004 | LMO1 | LIM domain only 1 | XM_011520099.2 | 80% | 89.6% | (many diffs) |
| 15 | human | 4004 | LMO1 | LIM domain only 1 | NM_001270428.2 | 74.8% | 83.8% | (many diffs) |
| 16 | human | 4004 | LMO1 | LIM domain only 1 | NM_002315.3 | 74.4% | 83.3% | (many diffs) |
| 17 | human | 55885 | LMO3 | LIM domain only 3 | XM_017019643.1 | 69.4% | 54.3% | (many diffs) |
| 18 | human | 4004 | LMO1 | LIM domain only 1 | XM_006718228.3 | 60.2% | 67.3% | (many diffs) |
| 19 | human | 55885 | LMO3 | LIM domain only 3 | NR_045012.1 | 11.4% | 1_354del;560_684del;915_3784del | |
| 20 | human | 55885 | LMO3 | LIM domain only 3 | NR_045014.1 | 10.4% | 1_287del;431_432ins59;664_3533del | |
| 21 | human | 55885 | LMO3 | LIM domain only 3 | NR_045013.1 | 10.2% | 1_354del;498_499ins59;731_3600del | |
| 22 | mouse | 109593 | Lmo3 | LIM domain only 3 | NM_207222.2 | 93.3% | 100% | (many diffs) |
| 23 | mouse | 109593 | Lmo3 | LIM domain only 3 | XM_006505340.1 | 93.3% | 100% | (many diffs) |
| 24 | mouse | 109593 | Lmo3 | LIM domain only 3 | XM_006505341.3 | 93.3% | 100% | (many diffs) |
| 25 | mouse | 109593 | Lmo3 | LIM domain only 3 | XM_006505342.2 | 93.3% | 100% | (many diffs) |
| 26 | mouse | 109593 | Lmo3 | LIM domain only 3 | XM_006505344.3 | 93.3% | 100% | (many diffs) |
| 27 | mouse | 109593 | Lmo3 | LIM domain only 3 | XM_011241131.2 | 93.3% | 100% | (many diffs) |
| 28 | mouse | 109593 | Lmo3 | LIM domain only 3 | XM_011241132.2 | 93.3% | 100% | (many diffs) |
| 29 | mouse | 109593 | Lmo3 | LIM domain only 3 | XM_011241133.2 | 93.3% | 100% | (many diffs) |
| 30 | mouse | 109593 | Lmo3 | LIM domain only 3 | XM_017321313.1 | 93.3% | 100% | (many diffs) |
| 31 | mouse | 109593 | Lmo3 | LIM domain only 3 | XM_006505339.3 | 86.7% | 92.9% | (many diffs) |
| 32 | mouse | 109594 | Lmo1 | LIM domain only 1 | NM_001302206.1 | 78.7% | 89.6% | (many diffs) |
| 33 | mouse | 109594 | Lmo1 | LIM domain only 1 | NM_001302205.1 | 73.7% | 83.8% | (many diffs) |
| 34 | mouse | 109594 | Lmo1 | LIM domain only 1 | NM_057173.3 | 73.3% | 83.3% | (many diffs) |
| 35 | mouse | 109594 | Lmo1 | LIM domain only 1 | XM_006507195.3 | 73.3% | 83.3% | (many diffs) |
| 36 | mouse | 109593 | Lmo3 | LIM domain only 3 | XM_006505343.3 | 61.5% | 64.5% | (many diffs) |
| 37 | mouse | 109593 | Lmo3 | LIM domain only 3 | XR_377405.3 | 53.2% | (many diffs) | |
| 38 | mouse | 109593 | Lmo3 | LIM domain only 3 | XR_868844.2 | 48.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 501
- ORF length:
- 435
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgct ctcagtccag ccagacacca agccgaaagg ttgtgctggc tgcaaccgaa 121 agatcaagga ccggtatctt ctaaaggcac tggacaaata ctggcatgaa gactgcctga 181 agtgtgccTG CTGTGACTGT CGCTTGGGAG AGGTGGGCTC CACCCTGTAC ACTAAAGCTA 241 ATCTTATCCT TTGTCGCAGA GACTATCTGA GGCTCTTTGG TGTAACGGGA AACTGCGCTG 301 CCTGTAGTAA GCTCATCCCT GCCTTTGAGA TGGTGATGCG TGCCAAGGAC AATGTTTACC 361 ACCTGGACTG CTTTGCATGT CAGCTTTGTA ATCAGAGATT TTGTGTTGGA GACAAATTTT 421 TCCTAAAGAA TAACATGATC CTTTGCCAGA CGGACTACGA GGAAGGTTTA ATGAAAGAAG 481 GTTATGCACC CCAGGTTCGC TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 541 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 601 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAAGCG ATGATACCCT 661 AACGCCTAGG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt