Construct: ORF TRCN0000467565

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004496.1_s317c1
Derived from:
ccsbBroadEn_14460
DNA Barcode:
ATATAGGGTACATATAATACCTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC57 (284001)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467565
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 284001 CCDC57 coiled-coil domain containi... NM_001316321.3 99.8% 99.7% (many diffs)
2 human 284001 CCDC57 coiled-coil domain containi... XM_017024474.2 90.7% 90.4% (many diffs)
3 human 284001 CCDC57 coiled-coil domain containi... XM_017024473.1 90.2% 90% (many diffs)
4 human 284001 CCDC57 coiled-coil domain containi... XM_011523556.3 88.4% 88.1% (many diffs)
5 human 284001 CCDC57 coiled-coil domain containi... XR_001752489.2 85.4% (many diffs)
6 human 284001 CCDC57 coiled-coil domain containi... NM_198082.4 81.7% 81.5% (many diffs)
7 human 284001 CCDC57 coiled-coil domain containi... XR_001752485.2 77% (many diffs)
8 human 284001 CCDC57 coiled-coil domain containi... XM_017024468.2 76.5% 76.2% (many diffs)
9 human 284001 CCDC57 coiled-coil domain containi... XR_001752490.2 75.9% (many diffs)
10 human 284001 CCDC57 coiled-coil domain containi... XR_001752494.1 73.9% (many diffs)
11 human 284001 CCDC57 coiled-coil domain containi... XM_017024466.2 72.8% 72.6% (many diffs)
12 human 284001 CCDC57 coiled-coil domain containi... XM_017024465.2 72.6% 72.4% (many diffs)
13 human 284001 CCDC57 coiled-coil domain containi... XM_017024464.2 72.5% 72.2% (many diffs)
14 human 284001 CCDC57 coiled-coil domain containi... XM_017024463.2 71.6% 71.4% (many diffs)
15 human 284001 CCDC57 coiled-coil domain containi... XM_011523548.3 67.6% 67.4% (many diffs)
16 human 284001 CCDC57 coiled-coil domain containi... XM_011523549.3 67.6% 67.4% (many diffs)
17 human 284001 CCDC57 coiled-coil domain containi... XM_011523551.3 67.6% 67.4% (many diffs)
18 human 284001 CCDC57 coiled-coil domain containi... XM_017024467.2 67.6% 67.4% (many diffs)
19 human 284001 CCDC57 coiled-coil domain containi... XR_001752486.2 67.6% (many diffs)
20 human 284001 CCDC57 coiled-coil domain containi... XR_001752484.1 67% (many diffs)
21 human 284001 CCDC57 coiled-coil domain containi... XM_011523546.3 66.4% 66.2% (many diffs)
22 human 284001 CCDC57 coiled-coil domain containi... XM_017024462.2 63.2% 63% (many diffs)
23 human 284001 CCDC57 coiled-coil domain containi... XM_011523545.3 62.5% 62.3% (many diffs)
24 human 284001 CCDC57 coiled-coil domain containi... XM_017024480.2 60.2% 59.6% (many diffs)
25 human 284001 CCDC57 coiled-coil domain containi... XM_017024469.2 60.1% 55.5% (many diffs)
26 human 284001 CCDC57 coiled-coil domain containi... XM_017024470.2 60.1% 55.5% (many diffs)
27 human 284001 CCDC57 coiled-coil domain containi... XM_017024481.1 59.7% 59.6% (many diffs)
28 human 284001 CCDC57 coiled-coil domain containi... XR_001752492.1 57.2% (many diffs)
29 human 284001 CCDC57 coiled-coil domain containi... XM_011523552.3 57% 54.5% (many diffs)
30 human 284001 CCDC57 coiled-coil domain containi... XR_001752493.1 53.8% (many diffs)
31 human 284001 CCDC57 coiled-coil domain containi... XM_017024471.2 52.4% 52.1% (many diffs)
32 human 284001 CCDC57 coiled-coil domain containi... XM_011523555.3 51.3% 51% (many diffs)
33 human 284001 CCDC57 coiled-coil domain containi... XM_017024472.2 51.3% 51% (many diffs)
34 human 284001 CCDC57 coiled-coil domain containi... XM_024450704.1 51.3% 51% (many diffs)
35 human 284001 CCDC57 coiled-coil domain containi... XM_017024475.2 43.3% 42.1% (many diffs)
36 human 284001 CCDC57 coiled-coil domain containi... XM_017024482.1 41.6% 41.7% (many diffs)
37 human 284001 CCDC57 coiled-coil domain containi... XM_017024479.1 37% 36.7% (many diffs)
38 human 284001 CCDC57 coiled-coil domain containi... XM_011523557.3 34% 33.7% (many diffs)
39 human 284001 CCDC57 coiled-coil domain containi... XM_017024476.2 34% 33.7% (many diffs)
40 human 284001 CCDC57 coiled-coil domain containi... XM_017024477.2 34% 33.7% (many diffs)
41 human 284001 CCDC57 coiled-coil domain containi... XM_017024478.2 34% 33.7% (many diffs)
42 human 284001 CCDC57 coiled-coil domain containi... XR_001752495.1 32.3% (many diffs)
43 human 284001 CCDC57 coiled-coil domain containi... NM_001367828.2 25% 24.8% (many diffs)
44 human 284001 CCDC57 coiled-coil domain containi... XR_001752487.1 23.5% (many diffs)
45 human 284001 CCDC57 coiled-coil domain containi... XR_001752488.1 23.1% (many diffs)
46 human 284001 CCDC57 coiled-coil domain containi... XR_001752491.1 21% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2319
ORF length:
2253
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct gccactgggc tcagagcccg ccctgaatga gctgctgctt cgcaaggagg
121aggagtggag ggcgctgcag gcacaccgca cccagctgca ggaggcggct ctgcaggaca
181cacggagcca gctggaggag gcgcagggga aactgcggtg cctgcaggag gactttgtct
241acaaccttca ggtgctggag gagcgggacc tcgagctgga gcgctatgac gccgccttcg
301cccaggccag ggagtgggag gaggccaggc gggcagaggt gagcgagctc aagatagagg
361cagctaagct gaggcaggcg ctagccagag aggccaggaa ggtggaggag ctgcagcagc
421agcagcagct ggcattccag gagcatcgcc tggagctgga gcgcgtccac agtgacaaga
481atggtgagat tgaccaccac cgggaacagt atgaaaatct aaaatggaca ctggagagaa
541aacttgagga gctcgacggt gagcttgctc tgcagagaca ggaactgctg ctggagtttg
601aatcgaaaat gcggaagagg gagcacgaat tccgtctgca ggctgacaac atgagcaaca
661cagccttgtc ccgggagctt aaggttaaac tactgcacaa agagctggag gctctgaagg
721aagccggggc aaaggctgca gagagtctgc agagggcaga ggccaccaac gccgagctgg
781agaggaagct ccagagccga gccggggagc tccaggatct ggaggccatg agccgcgccc
841gggtaaagga tttagaggat aaacttcact ctgtgcagct aaccaggaag aaggaagagg
901aaacatttaa gaggaagcat gaggagctcg accgtctggc cagggagaag gatgcagtgc
961tggtggcggt gaagggagcc cacgtggagc agctgcagga gctgcagacc agggttctgg
1021agctgcaggc ccactgcgag accctcgagg cgcagctccg cagggcagag tggagacagg
1081ctgacaccgc caaggagaag gacgctgcca ttgaccaact tcgtgaagat gcatcaactg
1141taaaatctgc ctgggatgct caaattgctc aactatctaa ggagatggtc tccagagacc
1201ttcagattca gacgctgcag gaagaagagg tgaagctcaa ggcacaggtg gcccgatccc
1261agcaggacat tgaaaggtac aagcaacagc tgtccctggc agtggaaagg gagcggagcc
1321tggagcgtga tcaggtgcag ctgggcctgg actggcagcg ccgctgtgat gacattgaaa
1381gggaccagat ccaaaagtca gaggccctga ttcagggtct gagcatggca aaaagtcagg
1441ttgctgccaa gctgcaggag acagagcagg cgctacagga gcaggaggtg gtgctgaagg
1501ccatgaccct ggaacgagac caggccgtgc aggccctgag gatgcatggg ctccccagac
1561caggggcaca gatgcttctc aggcagcatg aagaagaaat aagtaaagac tttccatcca
1621gtgagatcca gcggctccga gagcagaaca cgagcttgcg aaacgcgatt gcccagatga
1681ggaaagaaat ggaggctcta agccatcaga ttcctcctcc catccagaca gcggcagaga
1741gcacagatgc aaaccagcct gacccagagg ctgggggaga tgccgccact cctgattatg
1801ttctggccct tgaagcagaa atacgaactc taaagcataa gtttaaaact ctggaaaagc
1861atctagaaga tgtgttggat cctttaaaga tgtcctcacc tcatgctgag tctcagccca
1921gcgtccgcac ctcgacagag acgactggag ggtctgccca agctggtcaa gccggagggt
1981ctgtccaagc tggtcaagca ggaggatctg tccaagctgg cccagtatcc tctggactgg
2041cactcaggaa gctcggggac agagtgcagc tcctaaacct gctggtgaca cgactcagac
2101agaaggtgct gcgggaaccc ctggagccgg ccgctctcca gcgtgagctt ccccgtgagg
2161tggaccaggt acacctggag gttttggagc tgcggaagca ggtggcTGAG CTGGGGAAGC
2221ATCTCAGGAT AGCCCAGCAC GGGGGAGCGG AGCCTTCAGG CAGGAAGCAG CCCCCAGCCT
2281CGGACGCCGT GGCCCTTGGG AGAGAGGTGG GTGACCGCTA CCCAACTTTC TTGTACAAAG
2341TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
2401GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
2461ACGAATATAG GGTACATATA ATACCTACAC GCGTTAAGTC gacaatcaac ctctggatta
2521caaaatttgt gaaagatt

Download FASTA (ORF) (Full)