Construct: ORF TRCN0000467626
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018861.1_s317c1
- Derived from:
- ccsbBroadEn_14571
- DNA Barcode:
- TAGTGACAATCAACTTACAGCGAA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CDK11A (728642)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467626
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033486.3 | 37.6% | .6% | 11delA;506_1967del |
| 2 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002925.2 | 37.2% | .6% | 11delA;493_519del;533_1994del |
| 3 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_001787.3 | 37% | .6% | 11delA;506_2006del |
| 4 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_024011.4 | 36.9% | .6% | (many diffs) |
| 5 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542490.3 | 36.6% | .6% | 11delA;493_519del;533_2033del |
| 6 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542491.2 | 36.6% | .6% | 11delA;493_519del;533_2033del |
| 7 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542492.2 | 36.6% | .6% | 11delA;493_519del;533_2033del |
| 8 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_001291345.2 | 36.3% | .6% | 11delA;325_326ins30;476_1937del |
| 9 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002926.2 | 35.9% | .6% | (many diffs) |
| 10 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_006711065.4 | 35.7% | .6% | 11delA;325_326ins30;476_1976del |
| 11 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_033529.4 | 35.7% | .6% | (many diffs) |
| 12 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542493.3 | 35.3% | .6% | (many diffs) |
| 13 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_001313982.2 | 35.3% | .6% | (many diffs) |
| 14 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_001313896.2 | 35.1% | .6% | (many diffs) |
| 15 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033489.3 | 33.1% | .5% | (many diffs) |
| 16 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002928.2 | 32.5% | .5% | (many diffs) |
| 17 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542494.3 | 32.2% | .5% | (many diffs) |
| 18 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002927.2 | 32.2% | .5% | (many diffs) |
| 19 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_024451174.1 | 32.2% | .5% | (many diffs) |
| 20 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542495.3 | 30.9% | .5% | (many diffs) |
| 21 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958172.1 | 30.3% | (many diffs) | |
| 22 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NR_132739.2 | 30.2% | (many diffs) | |
| 23 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NR_132740.2 | 29.7% | (many diffs) | |
| 24 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958174.1 | 29.6% | (many diffs) | |
| 25 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958173.1 | 25% | (many diffs) | |
| 26 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958171.1 | 24.4% | (many diffs) | |
| 27 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538508.2 | 33.8% | .6% | (many diffs) |
| 28 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319929.1 | 33.8% | .6% | (many diffs) |
| 29 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | NM_007661.3 | 33.8% | .6% | (many diffs) |
| 30 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_011250179.2 | 33.8% | .6% | (many diffs) |
| 31 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XR_001784084.1 | 31.5% | (many diffs) | |
| 32 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319931.1 | 29.2% | .6% | (many diffs) |
| 33 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | NM_001347308.1 | 29.2% | .6% | (many diffs) |
| 34 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538511.2 | 29.2% | .6% | (many diffs) |
| 35 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319930.1 | 29.2% | .6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 96
- ORF length:
- 27
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gggtgatgaa aggactcttg gaaagtgaaa actttagatg aaattcttca 121 ggaaaagaaa cgaaggaagg aacaagagga gaaagcagag ataaaacgct taaaaaattc 181 tgatgaccgg gattccaagc gggattccct tgaggagggg gagctgagag atcaccgcat 241 ggagatcaca ataaggaact ccccgtatag aagagaagac tctatggaag acagaggaga 301 agaagatgat tctttggcca tcaaaccacc ccagcaaatg tctcggaaag aaaaagctca 361 tcacagaaaa gatgaaaaga gaaaagagaa acgtaggcat cgtagccatt cagcagaagg 421 ggggaagcat gctagagtga aagaaaaaga aagagagcac gaacgtcgga aacggcatcg 481 agaagaacag gataaagctc gccgggaatg ggaaagacag aagagaaggg agatggcaag 541 ggagcattcc aggagagaaa gggaccgctt ggagcagtca agaagatgac cttcagcgag 601 cacccctaca acaaccTCCG CAAGCGCTTC GGGGCTCTGC TCTCAGACCA GGGCTTCGAC 661 CTCATGAACA AGTTCCTGAC CTACTTCCCC GGGAGGAGGA TCAGCGCTGA GGACGGCCTC 721 AAGCATGAGT ATTTCCGCGA GACCCCCCTC CCCATCGACC CCTCCATGTT CCCCACGTGG 781 CCCGCCAAGA GCGAGCAGCA GCGTGTGAAG CGGGGCACCA GCCCGAGGCC CCCTGAGGGA 841 GGCCTGGGCT ACAGCCAGCT GGGTGACGAC GACCTGAAGG AGACGGGCTT CCACCTTACC 901 ACCACGAACC AGGGGGCCTC TGCCGCGGGC CCCGGCTTCA GCCTCAAGTT CTTGCCAACT 961 TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT 1021 TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA 1081 TCTTGTGGAA AGGACGATAG TGACAATCAA CTTACAGCGA AACGCGTTAA GTCgacaatc 1141 aacctctgga ttacaaaatt tgtgaaagat t