Construct: ORF TRCN0000467868

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005405.1_s317c1
Derived from:
ccsbBroadEn_12325
DNA Barcode:
TCAAGAACTTATCCGTTACTCGCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RARS2 (57038)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467868
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57038 RARS2 arginyl-tRNA synthetase 2, ... XR_001743517.2 83.1% (many diffs)
2 human 57038 RARS2 arginyl-tRNA synthetase 2, ... XM_011535949.3 71.5% 69.3% 1035_1038delGACA;1082_1506del
3 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NM_020320.5 62.1% 60.2% 1035_1038delGACA;1082_1734del
4 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NM_001350505.1 61% 59.1% 1035_1038delGACA;1082_1764del
5 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146756.1 46.8% 1_75del;1110_1113delGACA;1157_2301del
6 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_134857.1 46.4% 1_75del;1153_2318del
7 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146749.1 45.1% 1_75del;110_330del;1374_2388del
8 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146743.1 42.9% 1_75del;110_330del;1374_2507del
9 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146738.1 42.8% (many diffs)
10 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146740.1 42.8% (many diffs)
11 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146751.1 42.7% (many diffs)
12 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146744.1 42.6% (many diffs)
13 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146748.1 42.5% (many diffs)
14 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146757.1 41% (many diffs)
15 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146750.1 40.9% (many diffs)
16 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146755.1 40.8% (many diffs)
17 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146742.1 40.3% (many diffs)
18 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146753.1 39.5% (many diffs)
19 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146754.1 39.1% (many diffs)
20 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146746.1 38.9% (many diffs)
21 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146752.1 38.8% (many diffs)
22 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146747.1 37.5% (many diffs)
23 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146741.1 37.4% (many diffs)
24 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146739.1 37.3% (many diffs)
25 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146758.1 36% (many diffs)
26 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146759.1 34.3% (many diffs)
27 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NR_146745.1 34.2% (many diffs)
28 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NM_001318785.1 31.8% 29.9% 0_1ins525;510_513delGACA;557_1209del
29 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NM_001350507.1 31.8% 29.9% 0_1ins525;510_513delGACA;557_1209del
30 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NM_001350508.1 31.8% 29.9% 0_1ins525;510_513delGACA;557_1209del
31 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NM_001350509.1 31.8% 29.9% 0_1ins525;510_513delGACA;557_1209del
32 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NM_001350510.1 31.8% 29.9% 0_1ins525;510_513delGACA;557_1209del
33 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NM_001350511.1 31.8% 29.9% 0_1ins525;510_513delGACA;557_1209del
34 human 57038 RARS2 arginyl-tRNA synthetase 2, ... XM_024446494.1 31.8% 29.9% 0_1ins525;510_513delGACA;557_1209del
35 human 57038 RARS2 arginyl-tRNA synthetase 2, ... NM_001350506.1 31.2% 29.4% 0_1ins525;510_513delGACA;557_1239del
36 human 57038 RARS2 arginyl-tRNA synthetase 2, ... XM_017011073.1 31.2% 29.4% 0_1ins525;510_513delGACA;557_1239del
37 human 57038 RARS2 arginyl-tRNA synthetase 2, ... XM_017011074.2 31.2% 29.4% 0_1ins525;510_513delGACA;557_1239del
38 human 57038 RARS2 arginyl-tRNA synthetase 2, ... XM_017011075.2 31.2% 29.4% 0_1ins525;510_513delGACA;557_1239del
39 human 57038 RARS2 arginyl-tRNA synthetase 2, ... XM_017011076.2 31.2% 29.4% 0_1ins525;510_513delGACA;557_1239del
40 human 57038 RARS2 arginyl-tRNA synthetase 2, ... XM_017011077.2 31.2% 29.4% 0_1ins525;510_513delGACA;557_1239del
41 human 57038 RARS2 arginyl-tRNA synthetase 2, ... XM_017011078.2 31.2% 29.4% 0_1ins525;510_513delGACA;557_1239del
42 mouse 109093 Rars2 arginyl-tRNA synthetase 2, ... NM_181406.3 53.3% 50.3% (many diffs)
43 mouse 109093 Rars2 arginyl-tRNA synthetase 2, ... XR_390310.3 49.1% (many diffs)
44 mouse 109093 Rars2 arginyl-tRNA synthetase 2, ... XM_006537548.3 18.9% 16.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1143
ORF length:
1077
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gtgcggcttt cgccgcgcta ttgcttgcca gctttccaga gtgttgaatc
121ttccaccaga aaacttgatc acatcaatat ctgcagttcc aatttcccaa aaagaagaag
181tagctgattt tcagctttct gtggattctt tattggaaaa agacaatgac cattcaagac
241cagatattca agttcaagcc aagagactag cagagaagct aagatgtgat acagtggtga
301gtgaaatcag tactggtcaa aggactgtaa atttcaaaat aaacagagag ctcttaacaa
361agacagtgct acaacaagta attgaagatg gctcaaaata tggattaaaa agtgaacttt
421tctctggact tccccagaag aagattgtgg ttgaattcag ttcacctaat gttgccaaaa
481aatttcatgt tggacatttg cgttctacca tcataggaaa ttttatagca aatctcaaag
541aagctttagg acatcaagta ataagaataa attaccttgg cgattggggc atgcagtttg
601gtcttctggg aactggcttc cagctgtttg gctatgagga aaaactgcag tccaatcctc
661tacagcatct ctttgaagtt tatgtacaag ttaataaaga agcagcagat gataaaagtg
721tagcaaaagc agcacaggag ttcttccaac gattGGAACT GGGCGATGTG CAAGCACTTT
781CACTGTGGCA AAAATTTCGG GACTTGAGCA TTGAAGAGTA CATTCGGGTT TACAAGCGTC
841TGGGAGTATA TTTTGATGAA TATTCAGGAG AATCATTTTA TCGTGAAAAA TCTCAAGAGG
901TCTTAAAGTT GCTGGAGAGT AAAGGACTCC TACTGAAAAC AATAAAAGGA ACGGCTGTAG
961TAGATCTCTC TGGGAATGGC GACCCCTCCT CAATTTGTAC TGTAATGCGA AGTGATGGGA
1021CTTCTCTCTA TGCAACCAGA GATCTTGCAG CTGCTATAGA TCGAATGGAC AAGTATAATT
1081TTGATACAAT GATATATGTG ATAAAGGACA AAAAAAGCAT TTTCAGCAAG TATTCCAAAT
1141GCTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1201TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1261GGCTTTATAT ATCTTGTGGA AAGGACGATC AAGAACTTAT CCGTTACTCG CGACGCGTTA
1321AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)