Construct: ORF TRCN0000470248

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015659.1_s317c1
Derived from:
ccsbBroadEn_07589
DNA Barcode:
GGGCCATAAGAAATATCGCACTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLEC4M (10332)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470248
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10332 CLEC4M C-type lectin domain family... NM_014257.5 99.9% 99.7% 4A>T
2 human 10332 CLEC4M C-type lectin domain family... XM_006722611.2 99.6% 99.4% 4A>T;45_46insGAA
3 human 10332 CLEC4M C-type lectin domain family... NM_001144910.2 94.1% 93.9% 4A>T;353_354ins69
4 human 10332 CLEC4M C-type lectin domain family... NM_001144905.2 93.9% 93.7% 4A>T;45_46insGAA;350_351ins69
5 human 10332 CLEC4M C-type lectin domain family... XM_006722612.3 92.8% 92.7% 4A>T;128_129ins84
6 human 10332 CLEC4M C-type lectin domain family... XM_006722613.3 92.8% 92.7% 4A>T;45_46ins84
7 human 10332 CLEC4M C-type lectin domain family... NM_001144909.2 88.3% 88.2% 4A>T;491_492ins138
8 human 10332 CLEC4M C-type lectin domain family... NM_001144904.2 87.1% 86.9% 4A>T;45_46ins84;269_270ins69
9 human 10332 CLEC4M C-type lectin domain family... XR_936147.2 85.9% 1_118del;122A>T;1316_1392del
10 human 10332 CLEC4M C-type lectin domain family... XM_006722614.3 85.8% 85.7% 4A>T;45_46ins168
11 human 30835 CD209 CD209 molecule NM_021155.4 84.2% 79.3% (many diffs)
12 human 30835 CD209 CD209 molecule NM_001144897.2 82.8% 77.8% (many diffs)
13 human 10332 CLEC4M C-type lectin domain family... NM_001144907.2 82.7% 80.9% (many diffs)
14 human 10332 CLEC4M C-type lectin domain family... XM_006722615.2 81.1% 78.4% 4A>T;933_934ins113;972_973ins112
15 human 30835 CD209 CD209 molecule NM_001144896.2 78.8% 74.2% (many diffs)
16 human 30835 CD209 CD209 molecule NM_001144894.2 75.1% 72.3% (many diffs)
17 human 10332 CLEC4M C-type lectin domain family... XR_430125.2 74.4% 1_118del;122A>T;1316_1606del
18 human 10332 CLEC4M C-type lectin domain family... NM_001144911.2 74.1% 71.4% (many diffs)
19 human 10332 CLEC4M C-type lectin domain family... NM_001144906.2 65.4% 64.1% (many diffs)
20 human 30835 CD209 CD209 molecule NM_001144895.2 64.8% 59.8% (many diffs)
21 human 10332 CLEC4M C-type lectin domain family... NM_001144908.2 58% 55.3% (many diffs)
22 human 30835 CD209 CD209 molecule NM_001144893.2 55.7% 52.8% (many diffs)
23 human 30835 CD209 CD209 molecule XM_005272472.4 54.4% 49% (many diffs)
24 human 10332 CLEC4M C-type lectin domain family... NR_026707.2 52.2% (many diffs)
25 human 30835 CD209 CD209 molecule NM_001144899.2 48.8% 43.5% (many diffs)
26 human 10332 CLEC4M C-type lectin domain family... NR_026708.2 47.3% (many diffs)
27 human 10332 CLEC4M C-type lectin domain family... NR_026709.2 44.3% (many diffs)
28 human 10332 CLEC4M C-type lectin domain family... XR_001753584.1 40.3% (many diffs)
29 human 10332 CLEC4M C-type lectin domain family... XR_001753583.1 40.2% (many diffs)
30 human 30835 CD209 CD209 molecule NR_026692.2 24.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1263
ORF length:
1197
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtg tgactccaag gaaccaaggg tgcagcagct gggcctcctg gaagaagatc
121caacaaccag tggcatcaga ctttttccaa gagactttca attccagcag atacatggcc
181acaagagctc tacagggtgt cttggccatg gcgccctggt gctgcaactc ctctccttca
241tgctcttggc tggggtcctg gtggccatcc ttgtccaagt gtccaaggtc cccagctccc
301taagtcagga acaatccgag caagacgcaa tctaccagaa cctgacccag cttaaagctg
361cagtgggtga gctctcagag aaatccaagc tgcaggagat ctaccaggag ctgacccagc
421tgaaggctgc agtgggtgag ttgccagaga aatccaagct gcaggagatc taccaggagc
481tgacccggct gaaggctgca gtgggtgagt tgccagagaa atccaagctg caggagatct
541accaggagct gacccggctg aaggctgcag tgggtgagtt gccagagaaa tccaagctgc
601aggagatcta ccaggagctg acccggctga aggctgcagt gggtgagttg ccagagaaat
661ccaagctgca ggagatctac caggagctga cggagctgaa ggctgcagtg ggtgagttgc
721cagagaaatc caagctgcag gagatcTACC AGGAGCTGAC CCAGCTGAAG GCTGCAGTGG
781GTGAGTTGCC AGACCAGTCC AAGCAGCAGC AAATCTATCA AGAACTGACC GATTTGAAGA
841CTGCATTTGA ACGCCTGTGC CGCCACTGTC CCAAGGACTG GACATTCTTC CAAGGAAACT
901GTTACTTCAT GTCTAACTCC CAGCGGAACT GGCACGACTC CGTCACCGCC TGCCAGGAAG
961TGAGGGCCCA GCTCGTCGTA ATCAAAACTG CTGAGGAGCA GAACTTCCTA CAGCTGCAGA
1021CTTCCAGGAG TAACCGCTTC TCCTGGATGG GACTTTCAGA CCTAAATCAG GAAGGCACGT
1081GGCAATGGGT GGACGGCTCA CCTCTGTCAC CCAGCTTCCA GCGGTACTGG AACAGTGGAG
1141AACCCAACAA TAGCGGGAAT GAAGACTGTG CGGAATTTAG TGGCAGTGGC TGGAACGACA
1201ATCGATGTGA CGTTGACAAT TACTGGATCT GCAAAAAGCC CGCAGCCTGC TTCAGAGACG
1261AATACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1321TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1381GGCTTTATAT ATCTTGTGGA AAGGACGAGG GCCATAAGAA ATATCGCACT ACACGCGTTA
1441AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)