Construct: ORF TRCN0000470306

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014233.1_s317c1
Derived from:
ccsbBroadEn_04145
DNA Barcode:
CTTTCGGACTTCGTTGACTCCACG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZC3H14 (79882)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470306
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_207662.4 100% 100%
2 human 79882 ZC3H14 zinc finger CCCH-type conta... XM_024449713.1 73.1% 69.7% (many diffs)
3 human 79882 ZC3H14 zinc finger CCCH-type conta... XM_006720257.3 72.9% 69.5% (many diffs)
4 human 79882 ZC3H14 zinc finger CCCH-type conta... XM_005268073.4 69.8% 69.8% 460_852del;1109_1111delCAG
5 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326304.2 57.9% 45.9% (many diffs)
6 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326308.2 57.8% 45.8% (many diffs)
7 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_207661.2 45.8% 36.3% (many diffs)
8 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326302.2 45.1% 35.8% (many diffs)
9 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326300.2 45% 35.7% (many diffs)
10 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326314.2 43.5% 33.1% (many diffs)
11 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326305.2 43.5% 33% (many diffs)
12 human 79882 ZC3H14 zinc finger CCCH-type conta... XM_005268070.5 43.4% 34.4% (many diffs)
13 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326295.2 43.3% 34.3% (many diffs)
14 human 79882 ZC3H14 zinc finger CCCH-type conta... XM_011537161.3 38.8% 30.1% (many diffs)
15 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326315.2 37.5% 29.7% (many diffs)
16 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326316.1 37.5% 29.7% (many diffs)
17 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326297.2 37.4% 29.6% (many diffs)
18 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326301.2 36% 27.2% (many diffs)
19 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001160104.2 36% 28.5% (many diffs)
20 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326310.2 35.9% 28.5% (many diffs)
21 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001160103.2 35.8% 28.3% (many diffs)
22 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_024824.5 35.7% 28.3% (many diffs)
23 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326299.2 34.5% 25.9% (many diffs)
24 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326312.2 34.5% 25.8% (many diffs)
25 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326296.2 34.4% 26% (many diffs)
26 human 79882 ZC3H14 zinc finger CCCH-type conta... NM_001326307.2 34.3% 26% (many diffs)
27 human 79882 ZC3H14 zinc finger CCCH-type conta... NR_136936.2 4.4% (many diffs)
28 mouse 75553 Zc3h14 zinc finger CCCH type conta... NM_001160108.1 87.2% 83.4% (many diffs)
29 mouse 75553 Zc3h14 zinc finger CCCH type conta... XM_006516333.2 61.3% 58.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
984
ORF length:
918
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag aatgtcttca aagtttccat caccacctct accaattttt cttccaccgg
121agccagtgga cttaggttcc ataacaagct cctcttgttc actgaatgag ctagacaata
181tttcccacct tttaaggaaa atatcagctg atatcaatga aattaaagga atgaaagcag
241ctattttgac agtggaagca aatctttttg atctaaatgt tagagtgtcc aagaatgaag
301caaaaatttc atctttggag gttaaaatga atgaatattc aacaacatat gaatgcaaca
361gacagtttga agatcaagaa gaagatactg aatcacagtc aagaactact gatgtaaaaa
421taatcggctt ccttagaaac gttgagaaag gaactcaaca gaggcaatta ttatcccGAC
481TGCAAATCGA CCCAGTAATG GCAGAAACTC TGCAGATGAG TCAAGCTGAG ATGAGTGAAC
541TGAGTGTGGC ACAGAAACCA GAAAAACTTT TGGAGCGCTG CAAGTACTGG CCTGCTTGTA
601AAAATGGGGA TGAGTGTGCC TACCATCACC CCATCTCACC CTGCAAAGCC TTCCCCAATT
661GTAAATTTGC TGAAAAATGT TTGTTTGTTC ACCCAAATTG TAAATATGAT GCAAAGTGTA
721CTAAACCAGA TTGTCCCTTC ACTCATGTGA GTAGAAGAAT TCCAGTACTG TCTCCAAAAC
781CAGTTGCACC ACCAGCACCA CCTTCCAGTA GTCAGCTCTG CCGTTACTTC CCTGCTTGTA
841AGAAGATGGA ATGTCCCTTC TATCATCCAA AACATTGTAG GTTTAACACT CAATGTACAA
901GACCGGACTG CACATTCTAC CATCCCACCA TTAATGTCCC ACCACGACAT GCCTTGAAAT
961GGATTCGACC TCAAACCAGC GAATACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1021AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1081TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC TTTCGGACTT
1141CGTTGACTCC ACGACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1201att

Download FASTA (ORF) (Full)