Construct: ORF TRCN0000471560

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001630.1_s317c1
Derived from:
ccsbBroadEn_09322
DNA Barcode:
TTCCTTGAGCATGCGAAAGCAATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR20 (91833)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471560
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91833 WDR20 WD repeat domain 20 NM_144574.4 99.9% 99.8% 476C>A
2 human 91833 WDR20 WD repeat domain 20 NM_001242418.2 97.8% 97.7% 250_285del;512C>A
3 human 91833 WDR20 WD repeat domain 20 NM_181291.3 97.5% 97% (many diffs)
4 human 91833 WDR20 WD repeat domain 20 NM_001353657.2 97% 95.9% (many diffs)
5 human 91833 WDR20 WD repeat domain 20 NM_001353656.2 95.7% 95.4% (many diffs)
6 human 91833 WDR20 WD repeat domain 20 XM_017021767.1 95.5% 95.1% (many diffs)
7 human 91833 WDR20 WD repeat domain 20 NM_001242417.2 94.7% 94.6% 433_525del;569C>A
8 human 91833 WDR20 WD repeat domain 20 XM_011537341.2 93.8% 93.5% (many diffs)
9 human 91833 WDR20 WD repeat domain 20 NM_001330228.2 92.5% 92.1% (many diffs)
10 human 91833 WDR20 WD repeat domain 20 XM_017021785.1 92.1% 91.1% (many diffs)
11 human 91833 WDR20 WD repeat domain 20 XM_011537340.3 91.7% 91.4% (many diffs)
12 human 91833 WDR20 WD repeat domain 20 XM_011537339.2 91.4% 91.1% (many diffs)
13 human 91833 WDR20 WD repeat domain 20 XM_011537338.1 90.9% 90.6% (many diffs)
14 human 91833 WDR20 WD repeat domain 20 XM_011537337.2 90.8% 90.3% (many diffs)
15 human 91833 WDR20 WD repeat domain 20 NM_001353659.2 90.8% 89.9% (many diffs)
16 human 91833 WDR20 WD repeat domain 20 XM_011537336.2 90.3% 89.3% (many diffs)
17 human 91833 WDR20 WD repeat domain 20 XM_011537335.2 89.2% 88.9% (many diffs)
18 human 91833 WDR20 WD repeat domain 20 NM_181308.3 89.2% 89.1% 249_250ins183;293C>A
19 human 91833 WDR20 WD repeat domain 20 NM_001242416.2 87% 86.5% (many diffs)
20 human 91833 WDR20 WD repeat domain 20 NM_001353660.2 85.5% 86.1% 0_1ins202;46_97del;326C>A
21 human 91833 WDR20 WD repeat domain 20 XM_006720308.1 85.4% 85.1% (many diffs)
22 human 91833 WDR20 WD repeat domain 20 NM_001353658.2 83.4% 83.7% (many diffs)
23 human 91833 WDR20 WD repeat domain 20 XM_011537344.3 81.9% 82.2% (many diffs)
24 human 91833 WDR20 WD repeat domain 20 XM_011537343.1 77.9% 78.2% (many diffs)
25 human 91833 WDR20 WD repeat domain 20 NM_001353661.2 75% 73.6% (many diffs)
26 human 91833 WDR20 WD repeat domain 20 XM_011537345.2 74.7% 71.9% (many diffs)
27 human 91833 WDR20 WD repeat domain 20 NM_001353668.2 69.5% 69.5% 0_1ins519
28 human 91833 WDR20 WD repeat domain 20 NM_001353669.2 69.5% 69.5% 0_1ins519
29 human 91833 WDR20 WD repeat domain 20 NM_001353670.2 69.5% 69.5% 0_1ins519
30 human 91833 WDR20 WD repeat domain 20 NM_001353671.2 69.5% 69.5% 0_1ins519
31 human 91833 WDR20 WD repeat domain 20 NM_001353672.2 69.5% 69.5% 0_1ins519
32 human 91833 WDR20 WD repeat domain 20 NM_001353673.2 69.5% 69.5% 0_1ins519
33 human 91833 WDR20 WD repeat domain 20 NM_001353674.2 69.5% 69.5% 0_1ins519
34 human 91833 WDR20 WD repeat domain 20 NM_001353662.2 67.8% 67.4% (many diffs)
35 human 91833 WDR20 WD repeat domain 20 NM_001353663.2 67.8% 67.4% (many diffs)
36 human 91833 WDR20 WD repeat domain 20 NM_001353664.2 67.8% 67.4% (many diffs)
37 human 91833 WDR20 WD repeat domain 20 NM_001353665.2 67.8% 67.4% (many diffs)
38 human 91833 WDR20 WD repeat domain 20 NM_001353666.2 67.8% 67.4% (many diffs)
39 human 91833 WDR20 WD repeat domain 20 NM_001353667.2 66.5% 66.3% (many diffs)
40 human 91833 WDR20 WD repeat domain 20 XM_006720309.1 66.5% 66.3% (many diffs)
41 human 91833 WDR20 WD repeat domain 20 XM_006720310.1 66.5% 66.3% (many diffs)
42 human 91833 WDR20 WD repeat domain 20 XM_006720311.1 66.5% 66.3% (many diffs)
43 human 91833 WDR20 WD repeat domain 20 XM_011537346.1 66.5% 66.3% (many diffs)
44 human 91833 WDR20 WD repeat domain 20 XM_011537347.1 66.5% 66.3% (many diffs)
45 human 91833 WDR20 WD repeat domain 20 XM_017021772.1 66.5% 66.3% (many diffs)
46 human 91833 WDR20 WD repeat domain 20 XM_017021774.1 66.5% 66.3% (many diffs)
47 human 91833 WDR20 WD repeat domain 20 XM_024449742.1 66.5% 66.3% (many diffs)
48 human 91833 WDR20 WD repeat domain 20 XM_024449743.1 66.5% 66.3% (many diffs)
49 human 91833 WDR20 WD repeat domain 20 NR_038354.2 59.4% (many diffs)
50 human 91833 WDR20 WD repeat domain 20 NM_001353676.2 54.8% 54.8% 0_1ins771
51 human 91833 WDR20 WD repeat domain 20 NM_001353677.2 54.8% 54.8% 0_1ins771
52 human 91833 WDR20 WD repeat domain 20 NM_001353678.2 54.8% 54.8% 0_1ins771
53 human 91833 WDR20 WD repeat domain 20 XR_001750596.2 54.7% (many diffs)
54 human 91833 WDR20 WD repeat domain 20 NM_001353675.2 53.3% 53% (many diffs)
55 human 91833 WDR20 WD repeat domain 20 XM_006720313.2 52.3% 52.1% (many diffs)
56 human 91833 WDR20 WD repeat domain 20 XM_017021781.1 52.3% 52.1% (many diffs)
57 human 91833 WDR20 WD repeat domain 20 NM_001242415.2 31.7% 26.4% (many diffs)
58 human 91833 WDR20 WD repeat domain 20 XM_011537352.3 31.4% 25.4% (many diffs)
59 human 91833 WDR20 WD repeat domain 20 XM_011537353.3 29.6% 25.7% (many diffs)
60 human 91833 WDR20 WD repeat domain 20 NM_001353679.2 28.3% 26.2% (many diffs)
61 human 91833 WDR20 WD repeat domain 20 NM_001320130.2 27.5% 26.3% (many diffs)
62 human 91833 WDR20 WD repeat domain 20 XM_011537356.3 26.9% 25.8% (many diffs)
63 human 91833 WDR20 WD repeat domain 20 XM_011537358.3 25.3% 24.7% (many diffs)
64 human 91833 WDR20 WD repeat domain 20 NM_001353680.2 16.6% 15.4% (many diffs)
65 human 91833 WDR20 WD repeat domain 20 NM_001242414.2 14.9% 14.5% (many diffs)
66 human 91833 WDR20 WD repeat domain 20 NM_001353681.2 14.9% 14.5% (many diffs)
67 mouse 69641 Wdr20 WD repeat domain 20 NM_027149.3 93.4% 98% (many diffs)
68 mouse 69641 Wdr20 WD repeat domain 20 XM_006516204.3 91.1% 95.1% (many diffs)
69 mouse 70948 Wdr20rt WD repeat domain 20, retrogene NM_027614.1 90.6% 92.2% (many diffs)
70 mouse 69641 Wdr20 WD repeat domain 20 XM_006516203.3 90.3% 94.2% (many diffs)
71 mouse 69641 Wdr20 WD repeat domain 20 XM_006516205.2 79.6% 79.6% (many diffs)
72 mouse 69641 Wdr20 WD repeat domain 20 XM_006516206.3 67.2% 70% (many diffs)
73 mouse 69641 Wdr20 WD repeat domain 20 XM_011244170.2 67.2% 70% (many diffs)
74 mouse 69641 Wdr20 WD repeat domain 20 XM_006516207.3 62.4% 65.3% (many diffs)
75 mouse 69641 Wdr20 WD repeat domain 20 XR_001780476.1 47.8% (many diffs)
76 mouse 69641 Wdr20 WD repeat domain 20 XR_001780475.1 44.8% (many diffs)
77 mouse 69641 Wdr20 WD repeat domain 20 NM_001347428.1 26.1% 25.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1773
ORF length:
1707
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gacggaggga ggagggaagg agatgaacga gattaagacc caattcacca
121cccgggaagg tctgtacaag ctgctgccgc actcggagta cagccggccc aaccgggtgc
181ccttcaactc gcagggatcc aaccctgtcc gcgtctcctt cgtaaacctc aacgaccagt
241ctggcaacgg cgaccgcctc tgcttcaatg tgggccggga gctgtacttc tatatctaca
301agggggtccg caaggctgct gacttgagta aaccaataga taaaaggata tacaaaggaa
361cacagcctac ttgtcatgac ttcaaccacc taacagccac agcagaaagt gtctctctcc
421tagtgggctt ttccgcaggc caagtccagc ttatagaccc aatcaaaaaa gaaactagca
481aactttttaa tgaggaaaga ctaatagaca agtcacgagt tacctgtgtc aaatgggttc
541acggttcgga aagccttttc ctagtagccc actcgagtgg gaacatgtac ttatataatg
601tggagcacac ttgtggcacc acagcccccc actaccagct tctgaagcag ggagagagct
661ttgccgtgca cacttgcaag agcaaatcca cgaggaaccc tctccttaag tggacggtgg
721gcgagggggc cctcaacgag tttgctttct ccccagatgg caagttctta gcgtgcgtga
781gccaggacgg gtttctgcgg gtgttcaact ttgactcagt ggagctgcac ggtacgatga
841aaagctactt tgggggcttg ctgtgtgtgt gctggagccc ggatggcaag tacatcgtga
901caggtgggga ggacgacttg gtgacagtct ggtcctttgt agactgccga gtaatagcca
961gaggccacgg gcacaagtcc tgggtcagtg ttgtagcgtt tgacccttat accactagtg
1021tagaagaagg tgaccctatg gagtttagtg gcagcgatga ggacttccaa gaccttcttc
1081attttggcag agatcgagca aatagtacac agtccaggct ctccaaacgg aactctacag
1141acagccgccc cgtaagtgtc acgtatcggt ttggttccgt gggccaggac acacagctct
1201gtttatggga ccttacagaa gatatccttt tccctcacca acccctctca agagcaagga
1261cacacacaaa tgtcatgaat gccacgagtc ctcctgctgg aagcaatggg aacagtgtta
1321caacacccgg gaactctgtg ccgcctccTC TGCCACGGTC CAACAGCCTT CCACATTCAG
1381CAGTCTCAAA TGCTGGCAGC AAAAGCAGTG TCATGGACGG GGCCATTGCT TCTGGGGTCA
1441GCAAATTTGC AACACTTTCA CTACATGACC GGAAGGAGAG GCACCACGAG AAAGATCACA
1501AGCGAAATCA TAGCATGGGA CACATTTCTA GCAAGAGCAG TGACAAACTG AATCTAGTTA
1561CCAAAACCAA AACGGACCCT GCTAAAACTC TGGGAACGCC CCTGTGTCCT CGAATGGAAG
1621ATGTTCCCTT GTTAGAGCCG CTGATATGTA AAAAGATAGC ACATGAGAGA CTGACTGTAC
1681TAATATTTCT TGAAGACTGT ATAGTCACTG CTTGTCAGGA GGGATTTATT TGCACATGGG
1741GAAGGCCTGG TAAAGTGGTA AGTTTTAATC CTTACCCAAC TTTCTTGTAC AAAGTGGTTG
1801ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1861GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATT
1921CCTTGAGCAT GCGAAAGCAA TCACGCGTTA AGTCgacaat caacctctgg attacaaaat
1981ttgtgaaaga tt

Download FASTA (ORF) (Full)