Construct: ORF TRCN0000472192

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014020.1_s317c1
Derived from:
ccsbBroadEn_02663
DNA Barcode:
ATGCACTATTTATGCCGATATGCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DDX19B (11269)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472192
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11269 DDX19B DEAD-box helicase 19B NM_007242.7 100% 100%
2 human 11269 DDX19B DEAD-box helicase 19B NM_001363938.1 96.4% 95.2% (many diffs)
3 human 55308 DDX19A DEAD-box helicase 19A NM_018332.5 95% 96% (many diffs)
4 human 11269 DDX19B DEAD-box helicase 19B NM_001014451.3 93.5% 93.5% 296_297ins93
5 human 11269 DDX19B DEAD-box helicase 19B NM_001257172.2 90.1% 88.9% (many diffs)
6 human 55308 DDX19A DEAD-box helicase 19A NM_001320522.1 89% 89.7% (many diffs)
7 human 11269 DDX19B DEAD-box helicase 19B NM_001014449.3 77.2% 77.2% 0_1ins327
8 human 11269 DDX19B DEAD-box helicase 19B NM_001257173.2 77.2% 77.2% 0_1ins327
9 human 11269 DDX19B DEAD-box helicase 19B NM_001257174.2 77.2% 77.2% 0_1ins327
10 human 55308 DDX19A DEAD-box helicase 19A NM_001320525.1 76.8% 78.7% (many diffs)
11 human 11269 DDX19B DEAD-box helicase 19B NM_001257175.2 68.4% 68.4% 0_1ins453
12 human 55308 DDX19A DEAD-box helicase 19A NM_001320526.1 66.7% 67.6% (many diffs)
13 human 55308 DDX19A DEAD-box helicase 19A NM_001320527.1 58.5% 57.3% (many diffs)
14 human 55308 DDX19A DEAD-box helicase 19A NR_135296.1 39% (many diffs)
15 human 55308 DDX19A DEAD-box helicase 19A XR_002957830.1 34.6% (many diffs)
16 mouse 234733 Ddx19b DEAD (Asp-Glu-Ala-Asp) box ... NM_172284.5 90.2% 97.2% (many diffs)
17 mouse 13680 Ddx19a DEAD (Asp-Glu-Ala-Asp) box ... NM_007916.2 88.8% 94.7% (many diffs)
18 mouse 234733 Ddx19b DEAD (Asp-Glu-Ala-Asp) box ... NM_001190800.1 87.8% 93.1% (many diffs)
19 mouse 234733 Ddx19b DEAD (Asp-Glu-Ala-Asp) box ... NM_001190786.1 86.3% 90.8% (many diffs)
20 mouse 13680 Ddx19a DEAD (Asp-Glu-Ala-Asp) box ... XM_006530650.3 72.2% 77.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1503
ORF length:
1437
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc cactgactca tgggccctgg cggtggacga gcaggaagct gcggctgagt
121cgttgagcaa cttgcatctt aaggaagaga aaatcaaacc agataccaat ggtgctgttg
181tcaagaccaa tgccaatgca gagaagacag atgaagaaga gaaagaggac agagctgccc
241agtccttact caacaagctg atcagaagca accttgttga taacacaaac caagtggaag
301tcctgcagcg ggatccaaac tcccctctgt actcggtgaa gtcttttgaa gagcttcggc
361tgaaaccaca gcttctccaa ggagtctatg ccatgggttt caatcgtcca tccaagatac
421aagagaacgc attgccactg atgcttgctg agcccccaca gaacttaatt gcccaatctc
481agtctggtac tggtaaaaca gctgccttcg tgctggccat gcttagccaa gtagaacctg
541caaacaaata cccccagtgt ctatgtctct ccccaacgta tgagctcgcc ctccaaacag
601gaaaagtgat tgaacaaatg ggcaaatttt accctgaact gaagctagct tatgctgttc
661gaggcaataa attggaaaga ggccagaaga tcagtgagca gattgtcatt ggcacccctg
721ggactgtgct ggactggtgc tccaagctca agttcattga tcccaagaaa atcaaggtgt
781ttgttctgga tgaggctgat gtcatgatag ccactcaggg ccaccaagat cagagcatcc
841gcatccagag gatgctgccc aggaactgcc agatgctgct tttctccgcc acctttgaag
901actctgtgtg gaagtttgcc cagaaagtgg tcccagaccc aaacgttatc aaactgaagc
961gtgaggaaga gaccctggac accatcaagc agtactatgt cctgtgcagc agcagagacg
1021agaagttcca ggccttgtgt aaCCTCTACG GGGCCATCAC CATTGCTCAA GCCATGATCT
1081TCTGCCATAC TCGCAAAACA GCTAGTTGGC TGGCAGCAGA GCTCTCAAAA GAAGGCCACC
1141AGGTGGCTCT GCTGAGTGGG GAGATGATGG TGGAACAGAG GGCTGCAGTG ATTGAGCGCT
1201TCCGAGAGGG CAAAGAGAAG GTTTTGGTGA CCACCAACGT GTGTGCCCGC GGCATTGATG
1261TTGAACAAGT GTCTGTCGTC ATCAACTTTG ATCTTCCCGT GGACAAGGAC GGGAATCCTG
1321ACAATGAGAC CTACCTGCAC CGGATCGGGC GCACGGGCCG CTTTGGCAAG AGGGGCCTGG
1381CAGTGAACAT GGTGGACAGC AAGCACAGCA TGAACATCCT GAACAGAATC CAGGAGCATT
1441TTAATAAGAA GATAGAAAGA TTGGACACAG ATGATTTGGA CGAGATTGAG AAAATAGCCA
1501ACTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1561TCGGTCTCGA TTCTACGTAG TAATGAACTA GCCCGTAACT TGAAAGTATT TCGATTTCTT
1621GGCTTTATAT ATCTTGTGGA AAGGACGAAT GCACTATTTA TGCCGATATG CAACGCGTTA
1681AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)