Construct: ORF TRCN0000472482

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003400.1_s317c1
Derived from:
ccsbBroadEn_12575
DNA Barcode:
AATTTAAAATGATCCCAGGCATCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HMBOX1 (79618)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472482
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79618 HMBOX1 homeobox containing 1 NM_001324391.2 76.2% 76.2% 1_288del;1207A>C
2 human 79618 HMBOX1 homeobox containing 1 NM_001324392.1 76.2% 76.2% 1_288del;1207A>C
3 human 79618 HMBOX1 homeobox containing 1 NM_001324389.2 76% 76.1% 1_288del;1030_1032delGAA;1210A>C
4 human 79618 HMBOX1 homeobox containing 1 NM_001324390.1 76% 76.1% 1_288del;1030_1032delGAA;1210A>C
5 human 79618 HMBOX1 homeobox containing 1 XM_024447269.1 76% 76.1% 1_288del;1030_1032delGAA;1210A>C
6 human 79618 HMBOX1 homeobox containing 1 NM_001324393.2 75.9% 76% 1_288del;1029_1030insGCA;1204A>C
7 human 79618 HMBOX1 homeobox containing 1 NM_001324394.2 75.9% 76% 1_288del;1029_1030insGCA;1204A>C
8 human 79618 HMBOX1 homeobox containing 1 XM_017013824.2 75.9% 76% 1_288del;1029_1030insGCA;1204A>C
9 human 79618 HMBOX1 homeobox containing 1 NM_001324386.2 70.5% 66.8% (many diffs)
10 human 79618 HMBOX1 homeobox containing 1 NM_001135726.3 70.4% 66.6% (many diffs)
11 human 79618 HMBOX1 homeobox containing 1 NM_001324382.2 70.4% 66.6% (many diffs)
12 human 79618 HMBOX1 homeobox containing 1 NM_024567.4 70.4% 66.6% (many diffs)
13 human 79618 HMBOX1 homeobox containing 1 NM_001324387.2 70.3% 66.5% (many diffs)
14 human 79618 HMBOX1 homeobox containing 1 NM_001324388.2 70.3% 66.5% (many diffs)
15 human 79618 HMBOX1 homeobox containing 1 NM_001330498.2 69.3% 68.1% (many diffs)
16 human 79618 HMBOX1 homeobox containing 1 NM_001324383.2 69.1% 68% (many diffs)
17 human 79618 HMBOX1 homeobox containing 1 NM_001324384.1 69.1% 68% (many diffs)
18 human 79618 HMBOX1 homeobox containing 1 XM_017013823.2 69.1% 68% (many diffs)
19 human 79618 HMBOX1 homeobox containing 1 NM_001324385.2 69% 67.9% (many diffs)
20 human 79618 HMBOX1 homeobox containing 1 NM_001324395.2 68.8% 68.6% (many diffs)
21 human 79618 HMBOX1 homeobox containing 1 XM_005273641.5 68.6% 68.4% (many diffs)
22 human 79618 HMBOX1 homeobox containing 1 XM_006716398.2 54.2% 53.3% (many diffs)
23 human 79618 HMBOX1 homeobox containing 1 XR_001745594.1 51.1% (many diffs)
24 human 79618 HMBOX1 homeobox containing 1 XM_017013825.1 49.4% 46.9% (many diffs)
25 human 79618 HMBOX1 homeobox containing 1 XR_001745592.2 35.8% 1_561del;1480A>C;1489_2583del
26 human 79618 HMBOX1 homeobox containing 1 XR_001745590.2 35.8% (many diffs)
27 human 79618 HMBOX1 homeobox containing 1 XR_001745591.1 34.9% 1_630del;1549A>C;1558_2652del
28 human 79618 HMBOX1 homeobox containing 1 XR_001745588.1 34.8% (many diffs)
29 human 79618 HMBOX1 homeobox containing 1 XR_001745593.1 34.8% (many diffs)
30 human 79618 HMBOX1 homeobox containing 1 XR_001745589.1 34.4% (many diffs)
31 human 79618 HMBOX1 homeobox containing 1 XM_011544642.2 34% 33.5% (many diffs)
32 human 79618 HMBOX1 homeobox containing 1 NR_136758.2 23.3% (many diffs)
33 human 79618 HMBOX1 homeobox containing 1 NR_136757.2 22% (many diffs)
34 mouse 219150 Hmbox1 homeobox containing 1 XM_006518890.2 71.1% 75% (many diffs)
35 mouse 219150 Hmbox1 homeobox containing 1 XM_011245033.2 70.9% 74.8% (many diffs)
36 mouse 219150 Hmbox1 homeobox containing 1 XM_017315979.1 70.8% 74.8% (many diffs)
37 mouse 219150 Hmbox1 homeobox containing 1 NM_177338.6 65.9% 65.8% (many diffs)
38 mouse 219150 Hmbox1 homeobox containing 1 NM_001347626.1 65.7% 65.7% (many diffs)
39 mouse 219150 Hmbox1 homeobox containing 1 XM_011245031.2 65.7% 65.6% (many diffs)
40 mouse 219150 Hmbox1 homeobox containing 1 XM_011245035.2 65.3% 66.4% (many diffs)
41 mouse 219150 Hmbox1 homeobox containing 1 XM_011245036.2 65.3% 66.4% (many diffs)
42 mouse 219150 Hmbox1 homeobox containing 1 NM_001347627.1 65.1% 66.2% (many diffs)
43 mouse 219150 Hmbox1 homeobox containing 1 XM_011245034.2 65.1% 66.2% (many diffs)
44 mouse 219150 Hmbox1 homeobox containing 1 XM_006518882.3 64.6% 66.8% (many diffs)
45 mouse 219150 Hmbox1 homeobox containing 1 XM_011245029.2 64.5% 66.8% (many diffs)
46 mouse 219150 Hmbox1 homeobox containing 1 XM_011245037.2 64.4% 67.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
993
ORF length:
927
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc cccgtcacct agcaacagtt atgatacttc cccacagcct tgcactacca
121atcaaaatgg gagggagaat aatgagcgat tatctacatc caatggaaag atgtcaccaa
181ctcgctacca tgcaaacagc atgggtcaga ggtcatacag ttttgaagcc tcagaagagg
241acctagatgt agatgataaa gtggaagaat taatgaggag ggacagcagt gtgataaaag
301aggaaatcaa agcctttctt gccaatcgga ggatttccca agcagttgtt gcacaggtaa
361caggtatcag tcagagccgg atctctcatt ggctgttgca gcagggatca gacctgagtg
421aacagaagaa aagagcattt taccgatggt atcaacttga gaagacaaac cctggcgcta
481cactaagtat gagaccagcc cccattccaa tagaggaccc tgaatggaga caaacgcctc
541ccccagtctc tgccacatct ggtactttcc gactgcgacg agGGAGTCGA TTTACCTGGA
601GAAAGGAGTG CCTGGCTGTT ATGGAAAGTT ACTTCAATGA GAATCAATAC CCAGATGAAG
661CAAAGAGGGA AGAAATTGCA AACGCTTGCA ATGCAGTTAT ACAGAAGCCA GGCAAAAAGC
721TGTCAGATCT GGAAAGAGTT ACCTCCCTGA AAGTATATAA TTGGTTTGCT AACAGAAGGA
781AGGAGATCAA GAGGAGAGCC AATATTGCAG CAATCCTGGA GAGTCATGGG ATAGATGTGC
841AGAGTCCAGG AGGCCACTCA AACAGTGATG ATGTCGACGG GAATGACTAC TCTGAGCAGG
901ATACTTGGCA AGTACGCAAT GGGGAGGAGG AGGAGGGAAG AAGTTCAGAG GGAGGCAGAG
961AAGCAGAGAA GGTAGAAGAA GAGCGGAGGA TCTGCCCAAC TTTCTTGTAC AAAGTGGTTG
1021ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1081GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAA
1141TTTAAAATGA TCCCAGGCAT CAACGCGTTA AGTCgacaat caacctctgg attacaaaat
1201ttgtgaaaga tt

Download FASTA (ORF) (Full)