Construct: ORF ccsbBroadEn_12575

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003400.1_s300c1, BRDN0000385769
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HMBOX1 (79618)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79618 HMBOX1 homeobox containing 1 NM_001324391.2 76.2% 76.2% 1_288del;1207A>C
2 human 79618 HMBOX1 homeobox containing 1 NM_001324392.1 76.2% 76.2% 1_288del;1207A>C
3 human 79618 HMBOX1 homeobox containing 1 NM_001324389.2 76% 76.1% 1_288del;1030_1032delGAA;1210A>C
4 human 79618 HMBOX1 homeobox containing 1 NM_001324390.1 76% 76.1% 1_288del;1030_1032delGAA;1210A>C
5 human 79618 HMBOX1 homeobox containing 1 XM_024447269.1 76% 76.1% 1_288del;1030_1032delGAA;1210A>C
6 human 79618 HMBOX1 homeobox containing 1 NM_001324393.2 75.9% 76% 1_288del;1029_1030insGCA;1204A>C
7 human 79618 HMBOX1 homeobox containing 1 NM_001324394.2 75.9% 76% 1_288del;1029_1030insGCA;1204A>C
8 human 79618 HMBOX1 homeobox containing 1 XM_017013824.2 75.9% 76% 1_288del;1029_1030insGCA;1204A>C
9 human 79618 HMBOX1 homeobox containing 1 NM_001324386.2 70.5% 66.8% (many diffs)
10 human 79618 HMBOX1 homeobox containing 1 NM_001135726.3 70.4% 66.6% (many diffs)
11 human 79618 HMBOX1 homeobox containing 1 NM_001324382.2 70.4% 66.6% (many diffs)
12 human 79618 HMBOX1 homeobox containing 1 NM_024567.4 70.4% 66.6% (many diffs)
13 human 79618 HMBOX1 homeobox containing 1 NM_001324387.2 70.3% 66.5% (many diffs)
14 human 79618 HMBOX1 homeobox containing 1 NM_001324388.2 70.3% 66.5% (many diffs)
15 human 79618 HMBOX1 homeobox containing 1 NM_001330498.2 69.3% 68.1% (many diffs)
16 human 79618 HMBOX1 homeobox containing 1 NM_001324383.2 69.1% 68% (many diffs)
17 human 79618 HMBOX1 homeobox containing 1 NM_001324384.1 69.1% 68% (many diffs)
18 human 79618 HMBOX1 homeobox containing 1 XM_017013823.2 69.1% 68% (many diffs)
19 human 79618 HMBOX1 homeobox containing 1 NM_001324385.2 69% 67.9% (many diffs)
20 human 79618 HMBOX1 homeobox containing 1 NM_001324395.2 68.8% 68.6% (many diffs)
21 human 79618 HMBOX1 homeobox containing 1 XM_005273641.5 68.6% 68.4% (many diffs)
22 human 79618 HMBOX1 homeobox containing 1 XM_006716398.2 54.2% 53.3% (many diffs)
23 human 79618 HMBOX1 homeobox containing 1 XR_001745594.1 51.1% (many diffs)
24 human 79618 HMBOX1 homeobox containing 1 XM_017013825.1 49.4% 46.9% (many diffs)
25 human 79618 HMBOX1 homeobox containing 1 XR_001745592.2 35.8% 1_561del;1480A>C;1489_2583del
26 human 79618 HMBOX1 homeobox containing 1 XR_001745590.2 35.8% (many diffs)
27 human 79618 HMBOX1 homeobox containing 1 XR_001745591.1 34.9% 1_630del;1549A>C;1558_2652del
28 human 79618 HMBOX1 homeobox containing 1 XR_001745588.1 34.8% (many diffs)
29 human 79618 HMBOX1 homeobox containing 1 XR_001745593.1 34.8% (many diffs)
30 human 79618 HMBOX1 homeobox containing 1 XR_001745589.1 34.4% (many diffs)
31 human 79618 HMBOX1 homeobox containing 1 XM_011544642.2 34% 33.5% (many diffs)
32 human 79618 HMBOX1 homeobox containing 1 NR_136758.2 23.3% (many diffs)
33 human 79618 HMBOX1 homeobox containing 1 NR_136757.2 22% (many diffs)
34 mouse 219150 Hmbox1 homeobox containing 1 XM_006518890.2 71.1% 75% (many diffs)
35 mouse 219150 Hmbox1 homeobox containing 1 XM_011245033.2 70.9% 74.8% (many diffs)
36 mouse 219150 Hmbox1 homeobox containing 1 XM_017315979.1 70.8% 74.8% (many diffs)
37 mouse 219150 Hmbox1 homeobox containing 1 NM_177338.6 65.9% 65.8% (many diffs)
38 mouse 219150 Hmbox1 homeobox containing 1 NM_001347626.1 65.7% 65.7% (many diffs)
39 mouse 219150 Hmbox1 homeobox containing 1 XM_011245031.2 65.7% 65.6% (many diffs)
40 mouse 219150 Hmbox1 homeobox containing 1 XM_011245035.2 65.3% 66.4% (many diffs)
41 mouse 219150 Hmbox1 homeobox containing 1 XM_011245036.2 65.3% 66.4% (many diffs)
42 mouse 219150 Hmbox1 homeobox containing 1 NM_001347627.1 65.1% 66.2% (many diffs)
43 mouse 219150 Hmbox1 homeobox containing 1 XM_011245034.2 65.1% 66.2% (many diffs)
44 mouse 219150 Hmbox1 homeobox containing 1 XM_006518882.3 64.6% 66.8% (many diffs)
45 mouse 219150 Hmbox1 homeobox containing 1 XM_011245029.2 64.5% 66.8% (many diffs)
46 mouse 219150 Hmbox1 homeobox containing 1 XM_011245037.2 64.4% 67.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
993
ORF length:
927
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CCCGTCACCT AGCAACAGTT ATGATACTTC CCCACAGCCT TGCACTACCA
121ATCAAAATGG GAGGGAGAAT AATGAGCGAT TATCTACATC CAATGGAAAG ATGTCACCAA
181CTCGCTACCA TGCAAACAGC ATGGGTCAGA GGTCATACAG TTTTGAAGCC TCAGAAGAGG
241ACCTAGATGT AGATGATAAA GTGGAAGAAT TAATGAGGAG GGACAGCAGT GTGATAAAAG
301AGGAAATCAA AGCCTTTCTT GCCAATCGGA GGATTTCCCA AGCAGTTGTT GCACAGGTAA
361CAGGTATCAG TCAGAGCCGG ATCTCTCATT GGCTGTTGCA GCAGGGATCA GACCTGAGTG
421AACAGAAGAA AAGAGCATTT TACCGATGGT ATCAACTTGA GAAGACAAAC CCTGGCGCTA
481CACTAAGTAT GAGACCAGCC CCCATTCCAA TAGAGGACCC TGAATGGAGA CAAACGCCTC
541CCCCAGTCTC TGCCACATCT GGTACTTTCC GACTGCGACG AGGGAGTCGA TTTACCTGGA
601GAAAGGAGTG CCTGGCTGTT ATGGAAAGTT ACTTCAATGA GAATCAATAC CCAGATGAAG
661CAAAGAGGGA AGAAATTGCA AACGCTTGCA ATGCAGTTAT ACAGAAGCCA GGCAAAAAGC
721TGTCAGATCT GGAAAGAGTT ACCTCCCTGA AAGTATATAA TTGGTTTGCT AACAGAAGGA
781AGGAGATCAA GAGGAGAGCC AATATTGCAG CAATCCTGGA GAGTCATGGG ATAGATGTGC
841AGAGTCCAGG AGGCCACTCA AACAGTGATG ATGTCGACGG GAATGACTAC TCTGAGCAGG
901ATACTTGGCA AGTACGCAAT GGGGAGGAGG AGGAGGGAAG AAGTTCAGAG GGAGGCAGAG
961AAGCAGAGAA GGTAGAAGAA GAGCGGAGGA TCTGCCCAAC TTTCTTGTAC AAAGTtggca
1021ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)