Construct: ORF TRCN0000472582

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006895.1_s317c1
Derived from:
ccsbBroadEn_12102
DNA Barcode:
ATCCCGCCTCTGCTGCTGACCAGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BCOR (54880)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472582
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54880 BCOR BCL6 corepressor NM_001123384.2 10.9% 10.9% 1_4548del
2 human 54880 BCOR BCL6 corepressor XM_005272620.4 10.9% 10.9% 1_4548del
3 human 54880 BCOR BCL6 corepressor NM_001123383.1 10.8% 10.8% 1_4602del
4 human 54880 BCOR BCL6 corepressor NM_017745.6 10.8% 10.8% 1_4602del
5 human 54880 BCOR BCL6 corepressor XM_017029615.1 10.8% 10.8% 1_4602del
6 human 54880 BCOR BCL6 corepressor XM_005272619.4 10.7% 10.7% 1_4650del
7 human 54880 BCOR BCL6 corepressor NM_001123385.2 10.6% 10.6% 1_4704del
8 human 54880 BCOR BCL6 corepressor XM_005272616.1 10.6% 10.6% 1_4704del
9 human 54880 BCOR BCL6 corepressor XM_005272618.3 10.6% 10.6% 1_4704del
10 human 54880 BCOR BCL6 corepressor XM_006724536.3 10.6% 10.6% 1_4704del
11 human 54880 BCOR BCL6 corepressor XM_011543929.2 10.6% 10.6% 1_4704del
12 human 54880 BCOR BCL6 corepressor XM_011543930.1 10.6% 10.6% 1_4704del
13 human 54880 BCOR BCL6 corepressor XM_011543931.2 10.6% 10.6% 1_4704del
14 human 54880 BCOR BCL6 corepressor XM_017029616.2 5.1% 5.1% 1_4704del;4977_4978ins288
15 mouse 71458 Bcor BCL6 interacting corepressor NM_001168321.1 9.5% 9.6% (many diffs)
16 mouse 71458 Bcor BCL6 interacting corepressor NM_175046.3 9.5% 9.6% (many diffs)
17 mouse 71458 Bcor BCL6 interacting corepressor NM_175045.3 9.4% 9.5% (many diffs)
18 mouse 71458 Bcor BCL6 interacting corepressor NM_175044.3 9.3% 9.4% (many diffs)
19 mouse 71458 Bcor BCL6 interacting corepressor NM_029510.3 9.2% 9.3% (many diffs)
20 mouse 71458 Bcor BCL6 interacting corepressor XM_017318621.1 9.2% 9.3% (many diffs)
21 mouse 71458 Bcor BCL6 interacting corepressor XM_017318622.1 9.2% 9.3% (many diffs)
22 mouse 71458 Bcor BCL6 interacting corepressor XM_017318623.1 9.2% 9.3% (many diffs)
23 mouse 71458 Bcor BCL6 interacting corepressor XM_017318624.1 9.2% 9.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
627
ORF length:
561
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac ccacagtgaa cttatggaaa agttcttaac agattattta aatgacctcc
121agggtcgcaa tgatgatgac gccagtggca cttgggactt ctatggcagc TCTGTTTGTG
181AACCAGATGA TGAAAGTGGC TATGATGTTT TAGCCAACCC CCCAGGACCA GAAGACCAGG
241ATGATGATGA CGATGCCTAT AGCGATGTGT TTGAATTTGA ATTTTCAGAG ACCCCCCTCT
301TACCGTGTTA TAACATCCAA GTATCTGTGG CTCAGGGGCC ACGAAACTGG CTACTGCTTT
361CGGATGTCCT TAAGAAATTG AAAATGTCCT CCCGCATATT TCGCTGCAAT TTTCCAAACG
421TGGAAATTGT CACCATTGCA GAGGCAGAAT TTTATCGGCA GGTTTCTGCA AGTCTCTTGT
481TCTCTTGCTC CAAAGACCTG GAAGCCTTCA ACCCTGAAAG TAAGGAGCTG TTAGATCTGG
541TGGAATTCAC GAACGAAATT CAGACTCTGC TGGGCTCCTC TGTAGAGTGG CTCCACCCCA
601GTGATCTGGC CTCAGACAAC TACTGGTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
661GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
721AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAATCCCGCC
781TCTGCTGCTG ACCAGAACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
841aagatt

Download FASTA (ORF) (Full)

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