Construct: ORF TRCN0000472961
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007508.1_s317c1
- Derived from:
- ccsbBroadEn_15732
- DNA Barcode:
- ACCCGGTGTCATGCCACGCTAAAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MORF4L1 (10933)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472961
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10933 | MORF4L1 | mortality factor 4 like 1 | NM_001265603.1 | 99.8% | 99.5% | 7G>T |
| 2 | human | 10933 | MORF4L1 | mortality factor 4 like 1 | NM_001265604.1 | 99.8% | 99.5% | 7G>T |
| 3 | human | 10933 | MORF4L1 | mortality factor 4 like 1 | NM_001265605.1 | 99.8% | 99.5% | 7G>T |
| 4 | human | 10933 | MORF4L1 | mortality factor 4 like 1 | NM_006791.4 | 72.6% | 72.4% | 1_264del;271G>T |
| 5 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142418.1 | 68.2% | 70.8% | (many diffs) |
| 6 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142419.1 | 68.2% | 70.8% | (many diffs) |
| 7 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142420.1 | 68.2% | 70.8% | (many diffs) |
| 8 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142421.1 | 68.2% | 70.8% | (many diffs) |
| 9 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142422.1 | 68.2% | 70.8% | (many diffs) |
| 10 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142423.1 | 68.2% | 70.8% | (many diffs) |
| 11 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142424.1 | 68.2% | 70.8% | (many diffs) |
| 12 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142425.1 | 68.2% | 70.8% | (many diffs) |
| 13 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142426.1 | 68.2% | 70.8% | (many diffs) |
| 14 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142427.1 | 68.2% | 70.8% | (many diffs) |
| 15 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142428.1 | 68.2% | 70.8% | (many diffs) |
| 16 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142429.1 | 68.2% | 70.8% | (many diffs) |
| 17 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142430.1 | 68.2% | 70.8% | (many diffs) |
| 18 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142431.1 | 68.2% | 70.8% | (many diffs) |
| 19 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142432.1 | 68.2% | 70.8% | (many diffs) |
| 20 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_012286.3 | 68.2% | 70.8% | (many diffs) |
| 21 | human | 10933 | MORF4L1 | mortality factor 4 like 1 | NM_206839.2 | 64.8% | 64.6% | 1_381del;388G>T |
| 22 | mouse | 627352 | Morf4l1b | mortality factor 4 like 1B | NM_001326287.1 | 64.9% | 72.1% | (many diffs) |
| 23 | mouse | 21761 | Morf4l1 | mortality factor 4 like 1 | NM_024431.3 | 64.8% | 72.4% | (many diffs) |
| 24 | mouse | 21761 | Morf4l1 | mortality factor 4 like 1 | XM_006511018.1 | 57.9% | 64.8% | (many diffs) |
| 25 | mouse | 21761 | Morf4l1 | mortality factor 4 like 1 | NM_001039147.2 | 57.8% | 64.6% | (many diffs) |
| 26 | mouse | 664949 | Gm7420 | predicted gene 7420 | XR_389807.3 | 46.8% | (many diffs) | |
| 27 | mouse | 624582 | Morf4l1-ps1 | mortality factor 4 like 1, ... | NR_038091.1 | 12.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 774
- ORF length:
- 705
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gagatgggct gccccaggaa agaagacatc tggtctgcaa cagaaaaatg 121 ttgaagtgaa aacgaaaaag aacaaacaga aaacacctgg aaatggagat ggtggcagta 181 ccagtgagac ccctcagcct cctcggaaga aaagggcccg ggtagatcCT ACTGTTGAAA 241 ATGAGGAAAC ATTCATGAAC AGAGTTGAAG TTAAAGTAAA GATTCCTGAA GAGCTAAAAC 301 CGTGGCTTGT TGATGACTGG GACTTAATTA CCAGGCAAAA ACAGCTCTTT TATCTTCCTG 361 CCAAGAAGAA TGTGGATTCC ATTCTTGAGG ATTATGCAAA TTACAAGAAA TCTCGTGGAA 421 ACACAGATAA TAAGGAGTAT GCGGTTAATG AAGTTGTGGC AGGGATAAAA GAATACTTCA 481 ACGTAATGTT GGGTACCCAG CTACTCTATA AATTTGAGAG ACCACAGTAT GCTGAAATTC 541 TTGCAGATCA TCCCGATGCA CCCATGTCCC AGGTGTATGG AGCGCCACAT CTCCTGAGAT 601 TATTTGTACG AATTGGAGCA ATGTTGGCTT ATACACCTCT GGATGAGAAG AGCCTTGCTT 661 TATTACTCAA TTATCTTCAC GATTTCCTAA AGTACCTGGC AAAGAATTCT GCAACTTTGT 721 TCAGTGCCAG CGATTATGAA GTGGCTCCTC CTGAGTACCA TCGGAAAGCT GTGTTGCCAA 781 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 841 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 901 TATCTTGTGG AAAGGACGAA CCCGGTGTCA TGCCACGCTA AAAACGCGTT AAGTCgacaa 961 tcaacctctg gattacaaaa tttgtgaaag att