Transcript: Mouse NR_038091.1

Mus musculus mortality factor 4 like 1, pseudogene 1 (Morf4l1-ps1), non-coding RNA.

Source:
NCBI, updated 2015-05-20
Taxon:
Mus musculus (mouse)
Gene:
Morf4l1-ps1 (624582)
Length:
5159
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_038091.1
NBCI Gene record:
Morf4l1-ps1 (624582)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_038091.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256958 CTCCTCGGTCTTCGCTTATTT pLKO_005 4125 3UTR 100% 15.000 21.000 N Morf4l1-ps1 n/a
2 TRCN0000256957 ATCTACCAACTAGCTAATAAA pLKO_005 1721 3UTR 100% 15.000 12.000 N Morf4l1-ps1 n/a
3 TRCN0000240004 AGAACAGAGGCAGGCATAATA pLKO_005 4516 3UTR 100% 15.000 10.500 N Morf4l1-ps1 n/a
4 TRCN0000240002 GGAATTTCTGCCTGCTATAAT pLKO_005 3080 3UTR 100% 15.000 10.500 N Morf4l1-ps1 n/a
5 TRCN0000240003 TATGCTCCATGTATCATATAT pLKO_005 2414 3UTR 100% 15.000 10.500 N Morf4l1-ps1 n/a
6 TRCN0000295575 CGAGGAAATACAGATAATAAA pLKO_005 690 3UTR 100% 15.000 7.500 Y Morf4l1 n/a
7 TRCN0000238605 TCGAGGAAATACAGATAATAA pLKO_005 689 3UTR 100% 15.000 7.500 Y Gm4835 n/a
8 TRCN0000239889 CAGAAAGCAGAGTACTCAAAT pLKO_005 253 3UTR 100% 13.200 6.600 Y Morf4l1b n/a
9 TRCN0000239891 CATGAACAGAGTTGAAGTTAA pLKO_005 530 3UTR 100% 13.200 6.600 Y Morf4l1b n/a
10 TRCN0000238604 GAGACCACAGTACGCTGAAAT pLKO_005 794 3UTR 100% 13.200 6.600 Y Gm4835 n/a
11 TRCN0000071527 GCGCCACATTTGCTGAGATTA pLKO.1 858 3UTR 100% 13.200 6.600 Y Morf4l1 n/a
12 TRCN0000288265 GCGCCACATTTGCTGAGATTA pLKO_005 858 3UTR 100% 13.200 6.600 Y Morf4l1 n/a
13 TRCN0000239887 GTCATTCCTTAGGCATCTTAT pLKO_005 1508 3UTR 100% 13.200 6.600 Y Morf4l1b n/a
14 TRCN0000107583 GTGTGTAAAGGTTGCCATAAA pLKO.1 167 3UTR 100% 13.200 6.600 Y MORF4L1 n/a
15 TRCN0000300199 GTGTGTAAAGGTTGCCATAAA pLKO_005 167 3UTR 100% 13.200 6.600 Y MORF4L1 n/a
16 TRCN0000307582 TAGTCCTTCTCTTGTACAAAT pLKO_005 1108 3UTR 100% 13.200 6.600 Y Morf4l1 n/a
17 TRCN0000239890 GTGAAATACTTCATCCATTAC pLKO_005 198 3UTR 100% 10.800 5.400 Y Morf4l1b n/a
18 TRCN0000238606 TGAGATTATTTGTGCGAATTG pLKO_005 871 3UTR 100% 10.800 5.400 Y Gm4835 n/a
19 TRCN0000107582 GTTGCCATAAAGGACAAACAA pLKO.1 177 3UTR 100% 5.625 2.813 Y MORF4L1 n/a
20 TRCN0000071525 CCTTGCTTTATTACTGAACTA pLKO.1 929 3UTR 100% 4.950 2.475 Y Morf4l1 n/a
21 TRCN0000288202 CCTTGCTTTATTACTGAACTA pLKO_005 929 3UTR 100% 4.950 2.475 Y Morf4l1 n/a
22 TRCN0000071524 GCCTCTTCTCTATGAAGCAAA pLKO.1 146 3UTR 100% 4.950 2.475 Y Morf4l1 n/a
23 TRCN0000071523 GCTGAGATTATTTGTGCGAAT pLKO.1 869 3UTR 100% 4.050 2.025 Y Morf4l1 n/a
24 TRCN0000298416 GCTGAGATTATTTGTGCGAAT pLKO_005 869 3UTR 100% 4.050 2.025 Y Morf4l1 n/a
25 TRCN0000071526 CCTGCCAAGAAGAATGTGGAT pLKO.1 633 3UTR 100% 2.640 1.320 Y Morf4l1 n/a
26 TRCN0000218744 GAAACAGCGAGAACTTCAATA pLKO_005 293 3UTR 100% 13.200 6.600 Y EG546908 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_038091.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02566 pDONR223 100% 17% None (many diffs) n/a
2 ccsbBroad304_02566 pLX_304 0% 17% V5 (many diffs) n/a
3 TRCN0000468389 GCTCCCCGGTCGGACCGAAGGCAC pLX_317 38.5% 17% V5 (many diffs) n/a
4 ccsbBroadEn_14059 pDONR223 100% 12.1% None (many diffs) n/a
5 ccsbBroad304_14059 pLX_304 0% 12.1% V5 (many diffs) n/a
6 ccsbBroadEn_15732 pDONR223 0% 12.1% None (many diffs) n/a
7 ccsbBroad304_15732 pLX_304 0% 12.1% V5 (many diffs) n/a
8 TRCN0000472961 ACCCGGTGTCATGCCACGCTAAAA pLX_317 76.3% 12.1% V5 (many diffs) n/a
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