Construct: ORF TRCN0000479179
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006356.1_s317c1
- Derived from:
- ccsbBroadEn_12755
- DNA Barcode:
- GACCTTACCGCCTCTGTGCTATGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SYT16 (83851)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479179
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83851 | SYT16 | synaptotagmin 16 | NM_001367650.1 | 59.8% | 59.8% | 1_408del |
| 2 | human | 83851 | SYT16 | synaptotagmin 16 | XM_024449728.1 | 59.8% | 59.8% | 1_408del |
| 3 | human | 83851 | SYT16 | synaptotagmin 16 | XM_024449729.1 | 59.8% | 59.8% | 1_408del |
| 4 | human | 83851 | SYT16 | synaptotagmin 16 | XM_024449730.1 | 59.8% | 59.8% | 1_408del |
| 5 | human | 83851 | SYT16 | synaptotagmin 16 | XM_011537229.2 | 47.8% | 47.8% | 1_663del |
| 6 | human | 83851 | SYT16 | synaptotagmin 16 | NM_001367657.1 | 43.9% | 43.9% | 1_777del |
| 7 | human | 83851 | SYT16 | synaptotagmin 16 | NM_001367654.1 | 43.7% | 43.7% | 1_783del |
| 8 | human | 83851 | SYT16 | synaptotagmin 16 | XM_011537227.2 | 40.1% | 40.1% | 1_906del |
| 9 | human | 83851 | SYT16 | synaptotagmin 16 | NM_001367659.1 | 38% | 38% | 1_990del |
| 10 | human | 83851 | SYT16 | synaptotagmin 16 | NM_001367652.1 | 37.9% | 37.9% | 1_996del |
| 11 | human | 83851 | SYT16 | synaptotagmin 16 | NM_001367656.1 | 31.4% | 31.4% | 1_1326del |
| 12 | human | 83851 | SYT16 | synaptotagmin 16 | NM_001367661.1 | 31.4% | 31.4% | 1_1326del |
| 13 | human | 83851 | SYT16 | synaptotagmin 16 | NM_001367663.1 | 31.4% | 31.4% | 1_1326del |
| 14 | human | 83851 | SYT16 | synaptotagmin 16 | XM_006720272.3 | 31.4% | 31.4% | 1_1326del |
| 15 | human | 83851 | SYT16 | synaptotagmin 16 | XM_024449720.1 | 31.4% | 31.4% | 1_1326del |
| 16 | human | 83851 | SYT16 | synaptotagmin 16 | XM_024449721.1 | 31.4% | 31.4% | 1_1326del |
| 17 | human | 83851 | SYT16 | synaptotagmin 16 | XM_024449723.1 | 31.4% | 31.4% | 1_1326del |
| 18 | human | 83851 | SYT16 | synaptotagmin 16 | XM_024449724.1 | 31.4% | 31.4% | 1_1326del |
| 19 | human | 83851 | SYT16 | synaptotagmin 16 | XM_024449725.1 | 19.5% | 19.3% | (many diffs) |
| 20 | human | 83851 | SYT16 | synaptotagmin 16 | XM_017021697.2 | 18.8% | 18.5% | (many diffs) |
| 21 | human | 83851 | SYT16 | synaptotagmin 16 | XM_024449726.1 | 16.4% | 15.6% | (many diffs) |
| 22 | human | 83851 | SYT16 | synaptotagmin 16 | XM_024449727.1 | 15.6% | 15.3% | (many diffs) |
| 23 | human | 83851 | SYT16 | synaptotagmin 16 | XR_002957566.1 | 14.7% | 1_1755del;2054_2170del;2239_2240ins242 | |
| 24 | mouse | 238266 | Syt16 | synaptotagmin XVI | XM_006515841.3 | 34.2% | 35.3% | (many diffs) |
| 25 | mouse | 238266 | Syt16 | synaptotagmin XVI | NM_172804.2 | 33.3% | 34.4% | (many diffs) |
| 26 | mouse | 238266 | Syt16 | synaptotagmin XVI | XM_006515840.3 | 28.6% | 29.5% | (many diffs) |
| 27 | mouse | 238266 | Syt16 | synaptotagmin XVI | XM_006515837.3 | 27.9% | 28.8% | (many diffs) |
| 28 | mouse | 238266 | Syt16 | synaptotagmin XVI | XM_006515838.3 | 27.9% | 28.8% | (many diffs) |
| 29 | mouse | 238266 | Syt16 | synaptotagmin XVI | XM_006515839.3 | 27.9% | 28.8% | (many diffs) |
| 30 | mouse | 238266 | Syt16 | synaptotagmin XVI | XM_017315058.1 | 27.9% | 28.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 675
- ORF length:
- 609
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgac ccgagagaga atgatgggag agaaactatt ctatctcagc cacctgcacc 121 cagaagggga aatgaaagtg actctggttc tggagccaag aagtaatata agcagtggag 181 ggtctccgct cagcccatcT GCGGTTTCTC ACAGTGATAG TACTTCATCC ACGCAGTCGC 241 TGTCTCATGG AGGGGCGCCA GAGCTGTTGG TGGGGCTCTC GTACAATGCC ACAACGGGGC 301 GATTATCTGT GGAAATGATC AAAGGCAGCC ATTTCCGAAA CCTCGCTGTT AACCGAGCAC 361 CTGATACATA TGGAAAACTC TTTCTCCTCA ATTCTGTGGG TCAAGAGATG TCCCGTTGCA 421 AGACGTCCAT TCGGCGTGGT CAGCCCAATC CTGTCTATAA GGAGACCTTT GTTTTCCAGG 481 TGGCCCTCTT TCAGCTGTCT GATGTCACGT TGATGATTTC CGTTTATAAC AGGCGTACTA 541 TGAAGCGTAA AGAGATGATT GGCTGGATTG CCCTGGGCCA GAACAGCAGT GGAGAGGAGG 601 AACAAGATCA CTGGGAGGAG ATGAAGGAAA CCAAAGGCCA GCAGATCTGC AGATGGCACA 661 CTTTGCTGGA ATCCTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 721 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 781 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA GACCTTACCG CCTCTGTGCT 841 ATGTACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt