Construct: ORF TRCN0000479852
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003716.1_s317c1
- Derived from:
- ccsbBroadEn_03489
- DNA Barcode:
- TGGTAACCCCCCAGACACTCCAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COMMD4 (54939)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479852
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54939 | COMMD4 | COMM domain containing 4 | NM_017828.5 | 100% | 100% | |
| 2 | human | 54939 | COMMD4 | COMM domain containing 4 | NM_001321848.2 | 90.3% | 87.4% | (many diffs) |
| 3 | human | 54939 | COMMD4 | COMM domain containing 4 | NM_001321847.2 | 88.9% | 88.9% | 75_76ins66 |
| 4 | human | 54939 | COMMD4 | COMM domain containing 4 | NM_001321844.2 | 87.9% | 87.9% | 0_1ins72 |
| 5 | human | 54939 | COMMD4 | COMM domain containing 4 | XM_005254509.3 | 87.9% | 87.6% | 1_78del;80G>T;82_84delGCT |
| 6 | human | 54939 | COMMD4 | COMM domain containing 4 | XM_011521739.2 | 86.7% | 86.4% | 1_91delinsA |
| 7 | human | 54939 | COMMD4 | COMM domain containing 4 | XM_024449968.1 | 78.9% | 78.9% | 300_458del |
| 8 | human | 54939 | COMMD4 | COMM domain containing 4 | XM_005254510.3 | 78.1% | 77.8% | (many diffs) |
| 9 | human | 54939 | COMMD4 | COMM domain containing 4 | XM_011521740.1 | 77.1% | 76.8% | 1_91delinsA;165_166ins66 |
| 10 | human | 54939 | COMMD4 | COMM domain containing 4 | NM_001321845.2 | 76.5% | 76.3% | 0_1ins139;3delG |
| 11 | human | 54939 | COMMD4 | COMM domain containing 4 | NM_001284377.2 | 70.3% | 69.8% | 382_383ins177 |
| 12 | human | 54939 | COMMD4 | COMM domain containing 4 | NM_001284379.2 | 62.1% | 58.4% | (many diffs) |
| 13 | human | 54939 | COMMD4 | COMM domain containing 4 | XM_011521741.2 | 60.9% | 60.2% | 1_91delinsA;472_473ins177 |
| 14 | human | 54939 | COMMD4 | COMM domain containing 4 | NR_104313.2 | 60.8% | 1_27del;207_208ins52;573_843del | |
| 15 | human | 54939 | COMMD4 | COMM domain containing 4 | NM_001321846.2 | 59.2% | 58.7% | 75_76ins66;316_317ins177 |
| 16 | human | 54939 | COMMD4 | COMM domain containing 4 | NM_001284378.2 | 56.7% | 56.7% | 299_300ins258 |
| 17 | human | 54939 | COMMD4 | COMM domain containing 4 | XM_017022385.1 | 51.3% | 50.6% | 1_91delinsA;165_166ins66;406_407ins177 |
| 18 | human | 112268145 | LOC112268145 | uncharacterized LOC112268145 | XM_024450114.1 | 41.6% | 30.2% | (many diffs) |
| 19 | human | 732265 | COMMD4P2 | COMM domain containing 4 ps... | NR_160652.1 | 38.6% | (many diffs) | |
| 20 | human | 54939 | COMMD4 | COMM domain containing 4 | NR_104312.2 | 18.4% | 1_27del;625_3241del | |
| 21 | mouse | 66199 | Commd4 | COMM domain containing 4 | NM_025417.2 | 86.9% | 90.9% | (many diffs) |
| 22 | mouse | 66199 | Commd4 | COMM domain containing 4 | XM_006511343.2 | 77.2% | 79.8% | (many diffs) |
| 23 | mouse | 66199 | Commd4 | COMM domain containing 4 | XR_379435.2 | 57.1% | (many diffs) | |
| 24 | mouse | 66199 | Commd4 | COMM domain containing 4 | XR_003947970.1 | 57% | (many diffs) | |
| 25 | mouse | 66199 | Commd4 | COMM domain containing 4 | XR_003947969.1 | 55.1% | (many diffs) | |
| 26 | mouse | 66199 | Commd4 | COMM domain containing 4 | XR_379436.3 | 54% | (many diffs) | |
| 27 | mouse | 66199 | Commd4 | COMM domain containing 4 | XR_003947971.1 | 50.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 666
- ORF length:
- 597
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaggttccgg ttctgtggtg atctggactg tcccgactgg gtcctggcag 121 aaatcagcac gctggccaag atgtcctctg tgaagttgcg gctgctctgc agccaggtac 181 taaaggagct gctgggacag gggattgatt atgagaagat cctgaagctc acggctgacg 241 ccaagtttga gtcaggcgat gtgaaggcca cagtggcagt gctgagtttc aTCCTCTCCA 301 GTGCGGCCAA GCACAGTGTC GATGGCGAAT CCTTGTCCAG TGAACTGCAG CAGCTGGGGC 361 TGCCCAAAGA GCACGCGGCC AGCCTGTGCC GCTGTTATGA GGAGAAGCAA AGCCCCTTGC 421 AGAAGCACTT GCGGGTCTGC AGCCTACGCA TGAATAGGTT GGCAGGTGTG GGCTGGCGGG 481 TGGACTACAC CCTGAGCTCC AGCCTGCTGC AATCCGTGGA AGAGCCCATG GTGCACCTGC 541 GGCTGGAGGT GGCAGCTGCC CCAGGGACCC CAGCCCAGCC TGTTGCCATG TCCCTCTCAG 601 CAGACAAGTT CCAGGTCCTC CTGGCAGAAC TGAAGCAGGC CCAGACCCTG ATGAGCTCCC 661 TGGGCTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 721 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 781 CTTGGCTTTA TATATCTTGT GGAAAGGACG ATGGTAACCC CCCAGACACT CCAATACGCG 841 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt