Construct: ORF TRCN0000479938

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007981.1_s317c1
Derived from:
ccsbBroadEn_10490
DNA Barcode:
GTACCAGTTGGTCTCCCACTAACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GK3P (2713)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479938
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2710 GK glycerol kinase NM_001128127.2 97.8% 98.3% (many diffs)
2 human 2710 GK glycerol kinase NM_001205019.1 96.8% 97.3% (many diffs)
3 human 2710 GK glycerol kinase XM_006724483.2 93.1% 93.6% (many diffs)
4 human 2710 GK glycerol kinase NM_000167.5 92.5% 93.3% (many diffs)
5 human 2710 GK glycerol kinase XM_011545491.2 92.2% 92.6% (many diffs)
6 human 2710 GK glycerol kinase NM_203391.3 91.5% 92.3% (many diffs)
7 human 2710 GK glycerol kinase XM_006724484.2 88% 88.8% (many diffs)
8 human 2712 GK2 glycerol kinase 2 NM_033214.3 87.3% 87.5% (many diffs)
9 human 2710 GK glycerol kinase XM_011545492.1 87.1% 87.9% (many diffs)
10 human 2713 GK3P glycerol kinase 3 pseudogene NR_026575.1 74.2% 1_378del;1831G>A;2038_2232del
11 human 2710 GK glycerol kinase XM_005274488.4 61.4% 61.6% (many diffs)
12 human 2710 GK glycerol kinase XM_006724485.2 60.8% 61% (many diffs)
13 human 2710 GK glycerol kinase XM_006724486.3 60.8% 61% (many diffs)
14 human 2710 GK glycerol kinase XM_011545493.2 60.8% 61% (many diffs)
15 human 2710 GK glycerol kinase XM_011545494.2 60.8% 61% (many diffs)
16 human 2710 GK glycerol kinase XM_017029409.1 60.8% 61% (many diffs)
17 human 2710 GK glycerol kinase XM_017029411.1 56.1% 56.6% (many diffs)
18 human 2710 GK glycerol kinase XM_017029412.2 56.1% 56.6% (many diffs)
19 human 2710 GK glycerol kinase XM_017029410.1 55.5% 55.9% (many diffs)
20 mouse 14933 Gk glycerol kinase NM_212444.2 91% 95.8% (many diffs)
21 mouse 14933 Gk glycerol kinase NM_001294140.1 90% 94.8% (many diffs)
22 mouse 14933 Gk glycerol kinase XM_006527831.3 86.6% 91.2% (many diffs)
23 mouse 14933 Gk glycerol kinase NM_008194.3 85.8% 90.7% (many diffs)
24 mouse 14933 Gk glycerol kinase XM_006527829.3 85.7% 90.2% (many diffs)
25 mouse 14933 Gk glycerol kinase NM_001331046.1 84.9% 89.8% (many diffs)
26 mouse 14933 Gk glycerol kinase NM_001294138.1 81.6% 86.4% (many diffs)
27 mouse 14933 Gk glycerol kinase XM_006527833.3 80.8% 85.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1725
ORF length:
1659
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc agcctcaaag aaggcagttt tggggccatt ggtgggggca gtggaccaag
121gcaccagttc cacgcgcttt ttggttttca attcaagaac agctgaacta cttagtcatc
181atcaagtgga aataaaacaa gagttcccaa gagaaggatg ggtggaacag gaccctaagg
241aaattctaca ttctgtctat gagtgtatag agaaaacatg tgagaaactt ggacagctca
301atattggtat ttccaacata aaagctattg gtgtcagcaa ccagagggaa accaccgtag
361tctgggacaa gataactgga gagcctctct acaatgctgt ggtgtggctt gatctaagaa
421cacagtctac cgttgagagt cttagtaaaa gaattccagg aaataataac tttgtcaagt
481ccaagacagg ccttccactt agcacttact tcagtgcagt gaaacttcgc tggctcctcg
541acaatgtgag aaaagttcaa aaggccgttg aagaaaaacg agctcttttt gggactattg
601attcatggct tatttggagt ttgacaggag gcgtcaatgg aggtgtccac tgtacagatg
661taacaaatgc aagtaggact atgcttttca acattcattc tttggaatgg gataaacaac
721tctgtgaatt ttttggaatt ccaatggaaa ttcttccaca tgttcggagt tcttctgaga
781tctatggcct aatgaaagcg ggggccttgg aaggtgtgcc aatatctggg tgtttagggg
841accagtctgc tgcactggtg ggacaaatgt gcttccagat tggacaagcc aaaaatacgt
901atggaacagg atgtttctta ctatgtaata caggccataa gtgtgtattt tctgatcatg
961gccttctcac cacagtggct tacaaacttg gcagagacaa accggtatat tacgctttgg
1021aaggttctgt agctatagct ggtgctgtta ttcgctggct aagagacaat cttggaatta
1081taaagacctc agaagaaatt gaaaaacttg ctaaagaagt aggtacttct tatggctgct
1141acttcgtccc agcattttcg gggttatatg caccttattg ggagcccagc gcaagaggga
1201taatctgtgg actcactcaa ttcacgaata aatgccatat tgcttttgct gcattagaag
1261ctgtttgttt ccaaactcga gagattttgg atgccatgaa tcgagactgt ggaattccac
1321tcagtcattT GCAGGTTGAT GGAGGAATGA CCAGCAACAA AATTCTTATG CAGCTACAAG
1381CAGACATTCT GTATATTCCA GTAGTGAAGC CCTTGATGCC CGAAACCACT GCACTGGGTG
1441CTGCCATGGC GGCAGGGGCT GCAGAAGGAG TCGACGTATG GAGTCTTGAA CCTGAGGATT
1501TGTCCGCCGT CACGATGAAG CGGTTTGAAC CTCAGATTAA TGCTGAGGAA AGTGAAATTC
1561GTTATTCTAC ATGGAAGAAA GCTGTGATGA AGTCAATGGG TTGGGTTACA ACTCAATCTC
1621CAGAAGGTGG TGACCCTAGT GTCTTCTGTA GTCTGCCCTT GGGCTTTTTT ATAGTGAGTA
1681GCATGGCAAT GTTAATCGGA GCAAGGTACA TCTCAGGTAT TCCATACCCA ACTTTCTTGT
1741ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1801AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1861GAAAGGACGA GTACCAGTTG GTCTCCCACT AACCACGCGT TAAGTCgaca atcaacctct
1921ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)