Construct: ORF TRCN0000488554

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021769.1_s317c1
DNA Barcode:
CCGGAAAGGCAAATATTAGTTTAT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
RORA (6095)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488554
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6095 RORA RAR related orphan receptor A NM_134261.3 99.9% 100% 1428C>A
2 human 6095 RORA RAR related orphan receptor A XM_011521875.2 92.5% 89.3% (many diffs)
3 human 6095 RORA RAR related orphan receptor A XM_011521874.1 90.5% 86.5% (many diffs)
4 human 6095 RORA RAR related orphan receptor A XM_005254584.5 90.3% 89.6% (many diffs)
5 human 6095 RORA RAR related orphan receptor A NM_002943.3 88.7% 84.5% (many diffs)
6 human 6095 RORA RAR related orphan receptor A NM_134262.3 88% 87.3% (many diffs)
7 human 6095 RORA RAR related orphan receptor A XM_011521877.3 87.6% 87.5% (many diffs)
8 human 6095 RORA RAR related orphan receptor A XM_017022466.2 87.6% 87.3% (many diffs)
9 human 6095 RORA RAR related orphan receptor A NM_134260.2 87.2% 83.1% (many diffs)
10 human 6095 RORA RAR related orphan receptor A XM_011521878.2 73.7% 73.8% 0_1ins411;1017C>A
11 human 6095 RORA RAR related orphan receptor A XM_017022467.2 73.7% 73.8% 0_1ins411;1017C>A
12 human 6095 RORA RAR related orphan receptor A XM_011521879.3 71.8% 71.8% 0_1ins441;987C>A
13 mouse 19883 Rora RAR-related orphan receptor... NM_013646.2 91% 97.3% (many diffs)
14 mouse 19883 Rora RAR-related orphan receptor... XM_006510877.3 84.8% 87.8% (many diffs)
15 mouse 19883 Rora RAR-related orphan receptor... XM_006510878.2 81.9% 87.1% (many diffs)
16 mouse 19883 Rora RAR-related orphan receptor... NM_001289916.1 80.5% 86.9% (many diffs)
17 mouse 19883 Rora RAR-related orphan receptor... XM_006510880.1 80% 86.9% (many diffs)
18 mouse 19883 Rora RAR-related orphan receptor... XM_017313219.1 67% 73.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1638
ORF length:
1569
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat ggagtcagct ccggcagccc ccgaccccgc cgccagcgag ccaggcagca
121gcggcgcgga cgcggccgcc ggctccaggg agaccccgct gaaccaggaa tccgcccgca
181agagcgagcc gcctgccccg gtgcgcagac agagctattc cagcaccagc agaggtatct
241cagtaacgaa gaagacacat acatctcaaa ttgaaattat tccatgcaag atctgtggag
301acaaatcatc aggaatccat tatggtgtca ttacatgtga aggctgcaag ggctttttca
361ggagaagtca gcaaagcaat gccacctact cctgtcctcg tcagaagaac tgtttgattg
421atcgaaccag tagaaaccgc tgccaacact gtcgattaca gaaatgcctt gccgtaggga
481tgtctcgaga tgctgtaaaa tttggccgaa tgtcaaaaaa gcagagagac agcttgtatg
541cagaagtaca gaaacaccgg atgcagcagc agcagcgcga ccaccagcag cagcctggag
601aggctgagcc gctgacgccc acctacaaca tctcggccaa cgggctgacg gaacttcacg
661acgacctcag taactacatt gacgggcaca cccctgaggg gagtaaggca gactccgccg
721tcagcagctt ctacctggac atacagcctt ccccagacca gtcaggtctt gatatcaatg
781gaatcaaacc agaaccaata tgtgactaca caccagcatc aggcttcttt ccctactgtt
841cgttcaccaa cggcgagact tccccaactg tgtccatggc agaattagaa caccttgcac
901agaatatatc taaatcgcat ctggaaacct gccaatactt gagagaagag ctccagcaga
961taacgtggca gaccttttta caggaagaaa ttgagaacta tcaaaacaag cagcgggagg
1021tgatgtggca attgtgtgcc atcaaaatta cagaagctat acagtatgtg gtggagtttg
1081ccaaacgcat tgatggattt atggaactgt gtcaaaatga tcaaattgtg cttctaaaag
1141caggttctct agaggtggtg tttatcagaa tgtgccgtgc ctttgactct cagaacaaca
1201ccgtgtactt tgatgggaag tatgccagcc ccgacgtctt caaatcctta ggttgtgaag
1261actttattag ctttgtgttt gaatttGGAA AGAGTTTATG TTCTATGCAC CTGACTGAAG
1321ATGAAATTGC ATTATTTTCT GCATTTGTAC TGATGTCAGC AGATCGCTCA TGGCTGCAAG
1381AAAAGGTAAA AATTGAAAAA CTGCAACAGA AAATTCAGCT AGCTCTTCAA CACGTCCTAC
1441AGAAGAATCA CCGAGAAGAT GGAATACTAA CAAAGTTAAT ATGCAAGGTG TCTACATTAA
1501GAGCCTTATG TGGACGACAT ACAGAAAAGC TAATGGCATT TAAAGCAATA TACCCAGACA
1561TTGTGCGACT TCATTTTCCT CCATTATACA AGGAGTTGTT CACTTCAGAA TTTGAGCCAG
1621CAATGCAAAT TGATGGGTAA GACCCAGCTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1681CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1741AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACCGG AAAGGCAAAT
1801ATTAGTTTAT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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